BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945187
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47820.1 | Symbols: PUB39 | PLANT U-BOX 39 | chr3:17644428-1... 1229 0.0
AT5G62560.1 | Symbols: | RING/U-box superfamily protein with A... 287 2e-76
> AT3G47820.1 | Symbols: PUB39 | PLANT U-BOX 39 | chr3:17644428-17646160
FORWARD LENGTH=1733
Length=1733
Score = 1229 bits (665), Expect = 0.0
Identities = 802/866 (93%), Gaps = 17/866 (2%)
Strand=Plus/Plus
Query 143 AACTCCGACAGAGTTCCTTTGCCCCATCACCGGATTCTTGATGTCAGACCCAGTCGTTGT 202
|||||| ||||||||||| || ||||||||||| || |||||||||||||| ||||| ||
Sbjct 33 AACTCCAACAGAGTTCCTCTGTCCCATCACCGGCTTTTTGATGTCAGACCCCGTCGTCGT 92
Query 203 CGCTTCAGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGTCGGAATCTTGGGTTTGC 262
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 93 CGCTTCTGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGCCGGAATCTCAGTTTTGC 152
Query 263 TCCGAAGCTTCACGACGGAACTCAACCTGATTTATCCACTGTAATCCCAAATCTCGCCAT 322
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 153 TCCAAAGCTTCACGACGGAACTCAACCAGATTTATCCACCGTAATCCCAAATCTCGCCAT 212
Query 323 GAAATCAACAATTCTCAGCTGGTGCGATAGAAACAAAATGGAACATCCTCGTCCTCCTGA 382
||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 213 GAAATCAACAATTTTAAGCTGGTGCGATCGGAACAAAATGGAACATCCTCGTCCTCCTGA 272
Query 383 TTACGCTTACGTTGAAGGTGGTGTGGTTCGTACCCGTATGAATTCGA-TTCCTCCGGGTA 441
|||||||||||| |||||| || | ||||||||||| ||| |||| | |||||||||||
Sbjct 273 TTACGCTTACGTCGAAGGT-GT-T-GTTCGTACCCGAATGGATTC-ACTTCCTCCGGGTT 328
Query 442 CGGGTCATCGGATCGCTAAATCGGAAATCTTACCTCCGGTGGCTGAGAATTCAAATTCGA 501
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 329 CGGGTCATCGGATCGCTAAATCCGAAATCTTACCACCGGTGGCTGAGAATTCAAATTC-A 387
Query 502 ATTCGGATTCAGATTATGAATCTGTAATGGGAGCGATTCGATCTCGTTCAAGAACTTCAA 561
| |||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct 388 A-----ATTCAGATTACGATTCCGTGATGGGAGCGATTCGATCTCGTTCAAGGACTTCAT 442
Query 562 TATCGTCAAGC-ACTTCTCTTCCACTTTACCAAACCCGACCCGTTAATCACTCGACCCAG 620
||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 443 TATCGTCAA-CTACTTCTCTTCCACTTCACCAAACCCGACCCATTAATCACTCGACCCGG 501
Query 621 ATCC-AAGACTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGA 679
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATCCAAAG-CTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGA 560
Query 680 AGAAGAGATCTACAACAAATTAAGCA-GCGTAGACACAATCGATCACGAGCAAGGTCTGA 738
||||||||||||||||||||| | || | || ||||||||||||||||||||||||||||
Sbjct 561 AGAAGAGATCTACAACAAATTGA-CAAGTGTTGACACAATCGATCACGAGCAAGGTCTGA 619
Query 739 TTCAGCTAAGGAAGACGACGAGATCAAACGAGGGCACGAGAATCTCTCTTTGCACTGATC 798
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 620 TTCAGCTAAGGAAGACGACGAGATCAAACGAGACCACGAGAATCTCTCTTTGTACTGATC 679
Query 799 GGATTCTCTCGTTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACG 858
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GGATTCTCTCATTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACG 739
Query 859 CCGCCGCATCGATCGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGT 918
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGT 799
Query 919 CAGGATTCGTTCCTTTATTGATCGATGTTTTGAAATCGAGATCAACGGAGGCGCAAGAAC 978
|||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 800 CAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAGC 859
Query 979 ATGTAATCGGAGCTTTGTTTAGTTTA 1004
||||||||||||||||||||||||||
Sbjct 860 ATGTAATCGGAGCTTTGTTTAGTTTA 885
> AT5G62560.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr5:25109991-25112001 FORWARD LENGTH=2011
Length=2011
Score = 287 bits (155), Expect = 2e-76
Identities = 295/361 (82%), Gaps = 15/361 (4%)
Strand=Plus/Plus
Query 651 TCA-TCTT-TTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGCAGCG 708
||| |||| || |||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 760 TCACTCTTCTT-CTCCGATGTCACCGGAAGAAGAAGAGATCTTCAATAAATTGAG-AG-G 816
Query 709 TA--GACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAA 766
|| |||| |||| |||||||||||| |||||| || ||||||| ||||||||| |
Sbjct 817 TACCGACATTTTCGACCACGAGCAAGGTTTGATTCTTCTTAGGAAGATGACGAGATCTAG 876
Query 767 CGAGGG-CA-CGAGAATCTCTCTTTGCACTGATCGGATTCTCTCGTTACTCCGATCTCTG 824
|| | | || | | || ||||| || |||||||||||||| || |||||||| |||
Sbjct 877 TGAAGATCTTCGGGT-T-TCGCTTTGTACAGATCGGATTCTCTCTTTTCTCCGATCGCTG 934
Query 825 ATCGTTTCACGGTACAA-CATCGTGCAAACAAACGCCGCCGCATCGATCGTTAATCTCTC 883
| |||||||||||||| | | || || || |||||||| || ||| | |||||||||||
Sbjct 935 CTTGTTTCACGGTACAATCTT-GTTCAGACTAACGCCGCTGCTTCGGTGGTTAATCTCTC 993
Query 884 GTTAGAGAAACCTAACAAA-TTGAAAATCGTACGGTCAGGATTCGTTCCTTTATTGATCG 942
||| || |||| |||||| || || ||||||||||||||||| |||||| | |||||||
Sbjct 994 GTTGGAAAAACAGAACAAAGTT-AAGATCGTACGGTCAGGATTTGTTCCTCTGTTGATCG 1052
Query 943 ATGTTTTGAAATCGAGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTT 1002
|||||||||||||| || | ||||||||||| |||||||| |||||||||||||||||
Sbjct 1053 ATGTTTTGAAATCGGGAACGACGGAGGCGCAGGAACATGTTGCCGGAGCTTTGTTTAGTT 1112
Query 1003 T 1003
|
Sbjct 1113 T 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5