BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945188
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28440.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 946 0.0
> AT4G28440.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr4:14059988-14061386 FORWARD LENGTH=944
Length=944
Score = 946 bits (512), Expect = 0.0
Identities = 576/605 (95%), Gaps = 11/605 (2%)
Strand=Plus/Plus
Query 1 TCTGGGTTTTGTTATTTG-AGCGATGGCGACGTCTGGAACTGCTGCGGTTGCGACGGGAA 59
||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 44 TCTGGGTATTGTAATTTGAAGCGATGGCGACGACTGGAACTGCTGCGGTTGCGACGGGAA 103
Query 60 CGTCGACGGTGAAGAGAAAACCGGTGTTTGTGAAGGTGGAACAGCTAAAGCCTGGAACGA 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 CTTCGACGGTGAAGAGAAAACCGGTGTTTGTGAAGGTGGAACAGCTAAAGCCTGGAACGA 163
Query 120 CTGGTCACACTTTGACTGTTAAGGTCATTGAGGCTAATATCGTGGTTCCTGTTACCCGGA 179
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 164 CTGGTCACACGTTGACTGTTAAAGTCATTGAGGCTAATATCGTGGTTCCTGTTACCCGGA 223
Query 180 AGACTCG-CCCGACGAGTTCTATGAGTCGTCCTTCTCAGCCTAGTCGAATCGTTGAGTGT 238
||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 224 AGACTCGTCCAG-CGAGTTCTCTGAGTCGTCCTTCTCAGCCTAGTCGAATCGTTGAGTGT 282
Query 239 CTCATCGGAGATGAAACTGGGTGTATCCTCTTCACTGCTCGTAACGATCAAGTTGATCTT 298
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CTCATCGGTGACGAAACTGGGTGTATCCTCTTCACTGCTCGTAACGATCAAGTTGATCTT 342
Query 299 ATGAAGCCAGGG-GCAACGGTGATACTGCGCAATTCAAGGATAGACATGTTCAAGGGTAC 357
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ATGAAGCC-GGGTGCTACGGTGATACTGCGCAATTCAAGGATAGACATGTTCAAGGGTAC 401
Query 358 AATGAGGCTAGGGGTTGATAAATGGGGACGCATCGAAGCCACT-GAACCTGCGTCTTTCG 416
|||||||||||| |||||||||||||||||||||||||||||| || || |||||||||
Sbjct 402 AATGAGGCTAGGAGTTGATAAATGGGGACGCATCGAAGCCACTGGAGCC-GCGTCTTTCA 460
Query 417 CAGTCAAGGAGGATAACAATCTGTCTCTTGTTGAGTATGAACTGATCAATG-T--TGGTG 473
| |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 461 CTGTCAAGGAGGATAACAATCTGTCTCTCGTTGAGTATGAACTGATCAATGTTGGTGGTG 520
Query 474 ATCAGTGATCTTTTTAGTCTGTTTATGGAAGTTAACCCCTGAGAGTGTTGGGTTCTGATT 533
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 521 ATCAGTGATC-TTTTAGTATGTTTATGGAGGTTAACCCCTGAGAGTGTTGGGTTCTGATT 579
Query 534 TTTCTACCGTGAAGGTCTTTGATTTAGATGATGAAGATTGTATGACTGGTCCAGAGTTGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTTCTACCGTGAAGGTCTTTGATTTAGATGATGAAGATTGTATGACTGGTCCAGAGTTGC 639
Query 594 TTGTA 598
|||||
Sbjct 640 TTGTA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5