BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945197
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28370.1 | Symbols: | RING/U-box superfamily protein | chr4... 2892 0.0
AT2G20650.1 | Symbols: | RING/U-box superfamily protein | chr2... 1598 0.0
> AT4G28370.1 | Symbols: | RING/U-box superfamily protein | chr4:14034654-14041322
FORWARD LENGTH=3919
Length=3919
Score = 2892 bits (1566), Expect = 0.0
Identities = 1676/1730 (97%), Gaps = 3/1730 (0%)
Strand=Plus/Plus
Query 1 TTTTTGGGGGTTGTGAGTGATATGAAGAAGCGGGAAAATTTGGGATTAGGG---TTCGAG 57
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 342 TTTTTGGGGGTTGTGAGTGATATGAAGAAGCGGGAACATTTGGGATTAGGGTTCTTCGAG 401
Query 58 TGGCAGGTTATCTTCTGGTTATCGATTTGGTTGGCGATTTCGCAACAAGCGCTGGGATTG 117
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TGGCAGATTATCTTATGGTTATCGATTTGGTTGGCGATTTCGCAACAAGCGCTGGGATTG 461
Query 118 AGACCCATAAGGGAGAAAACTCGATCATGGAGTGACGAGTGGCTCTTTGGTAGGAAACAA 177
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AGACCTATTAGGGAGAAACCTCGATCATGGAGTGACGAGTGGCTCTTTGGTAGGAAACAA 521
Query 178 GAAGCTGAAGTAGGACCGTTTTCTGCATGGAATATAACAGGAACGTATAGAGGAACTTGG 237
||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 522 GAAGCTGAAGTTGGACCCTTTTCTGCTTGGAATATAACAGGAACTTATAGAGGAACTTGG 581
Query 238 AAGTTTCTGAATTCCGTCAATAGCTCTTCGAAGTTTCAAGACTTTCAAAAAGAAAATGGT 297
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAGTTTCTGAATTCCTTAAATAGCTCTTCGAAGTTTCAAGACTTTCAAAAAGAAAATGGT 641
Query 298 AATTCTGTGGTTGAGTTAGTGGCAGTTCCTACAAAGATAACCGGTGTGCATTATGTTCAG 357
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 642 AATTCTGTGGTTGAGTTAGTAGCAGTTCCAACGAAGATAACTGGTGTGCATTATGTTCAG 701
Query 358 GGTGTAGTTGTTTTCCATGACGTATTTGACAATGAACAAAATGTGGGTGGTGCCCAAATA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GGTGTAGTTGTTTTCCATGACGTATTTGACAATGAACAAAATGTGGGTGGTGCCCAAATA 761
Query 418 AATCTGGAAGGTGTATATATATGGCCCTTTAGACAACTCCGCCTTGTGGCTAACAGCGGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AATCTGGAAGGTGTATATATATGGCCCTTTAGACAACTCCGCCTTGTGGCTAACAGCGGC 821
Query 478 AAGGAGAGTGATTCAGGGCAAGAAGACAATAATCTTCTCTCAAATCCCTATCATCTGCTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGGAGAGTGATTCAGGGCAAGAAGACAATAATCTTCTCTCAAATCCCTATCATCTGCTT 881
Query 538 GGAATTTTCTCCTCTCAAGTGTTTCAAGAATCTCCAAGAGACAGATTACTGAAACGGAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GGAATTTTCTCCTCTCAAGTGTTTCAAGAATCTCCAAGAGACAGATTACTGAAACGGAAA 941
Query 598 CTTTCTCCAGTAAATGAAATGGAGAAGCACTGTAACATCGAAATAGCAGCTCAAGTATCC 657
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 942 CTTTCTCCAGTAAATGAGATGGAGAAGCACTGTAATATCGAAATAGCAGCTCAAGTATCC 1001
Query 658 CGCGTGGCTTCTGGTGAAAATAATGGAGACAAAAATTATTATCACATGGAAGGATTGATG 717
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CGTGTGGCTTCTAGTGAAAATAATGGAGACAAAAATTATTATCACATGGAAGGATTGATG 1061
Query 718 GAAAGTCCTGGGGTAGGCGATGACGGAGATTGTTTTTCCCCTTTGTTACTGAATGCAACT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1062 GAAAGTCCTGGGGTAGGCGATGACGGAGATTGTTTTTCCCCTTTGTTACTGAACGCAACT 1121
Query 778 TCTGTAAATGTCGAAGTCTACTATAACAAAGCTGTGAACTATACACTGATGGTCACTTTT 837
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TCTGTAAATGTTGAAGTCTACTATAACAAAGCTGTGAACTATACACTGATGGTCACTTTT 1181
Query 838 ATCTCTTTCCTCCAGGTTCTTTTGTTGATCCGGCAAATGGAGCACGGTAACACACAATCT 897
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GTCTCTTTCCTCCAGGTTCTTCTGTTGATCCGGCAAATGGAGCACGGTAACACACAATCT 1241
Query 898 GGTGCTGCTAAGGTATCCATTGTAATGATTGGGCAACAAGCGATCATGGATGCTTATTTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GGTGCTGCTAAGGTATCCATTGTAATGATTGGGCAACAAGCGATCATGGATGCTTATTTG 1301
Query 958 TGCCTCTTACATCTCACAGCCGGTATATTAGTCGAATCTCTGTTTAATGCATTTGCAACC 1017
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1302 TGCCTCTTACATCTAACAGCCGGTATATTAGTCGAATCTCTATTTAATGCATTTGCAACC 1361
Query 1018 GCTGCGTTCTTCAAATTCGTAGTCTTCTCGATTTTTGAGATGAGATATCTTCTGGCTATA 1077
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1362 GCTGCGTTCTTCAAGTTCGTAGTCTTTTCGATTTTTGAGATGAGATATCTTCTGGCTATA 1421
Query 1078 TGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGCGAGAACTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 TGGAAAGCAACCCGTCCTTCCAATAGCGGAGAGGGTTGGGAAACAATGAGGAGAGAACTG 1481
Query 1138 TCCTTTCTGTACAGCCGTTTCTATGGGATCCTTCTTGGAGGCATTTTGATAATGTACCAG 1197
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 TCCTTTCTGTACAGTCGTTTCTATGGGATCCTTCTTGGAGGCATTTTGATAATGTACCAG 1541
Query 1198 TTCCACAACTACATGCAGCCGATTCTCCTTCTCATGTACTCATTTTGGATACCACAAATA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 TTCCACAACTACATGCAGCCGATTCTCCTTCTCATGTACTCATTTTGGATACCACAAATA 1601
Query 1258 GTTGCCAATGTCGTCCGGGATTCAAGAAAGCCTCTGCATCTGTATTATATCTTGGGCATG 1317
|| |||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 1602 GTCGCCAATGTTGTCCGGGATTCAAGAAAGCCTCTGCACCCATATTACATCTTGGGCATG 1661
Query 1318 ACAGCGACACGGTTAGCTATACCGTTATATGTTTTTGGATGCCCACACAACTTCATGCGT 1377
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ACAGCTACACGGTTAGCTATACCGTTATATGTTTTTGGATGCCCACACAACTTCATGCGT 1721
Query 1378 GTAGAGCCCAACAAGGTCTGGTGTATATGCTTGTGCACATCCATGGGGTCGCAAGCTGTC 1437
||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1722 GTAGAGCCCAACAAGGTTTGGTGTATATGCTTGTGCACATTCATGGGGTTGCAAGCCGTC 1781
Query 1438 ATTCTTCTTCTTCAGCATTATTTTGGTTCACGCTGCTTTGTTCCCCGTCAGATGCTACCA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 ATTCTTCTTCTTCAGCATTATTTTGGTTCACGCTGCTTTGTTCCCCGTCAGATGCTACCA 1841
Query 1498 GAGAAATACAACTACCACCGAAGATTTAATCGGGACGTAAGCCGCAACACTGATTGCGTT 1557
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 1842 GAGAAATACAACTACCACCGAAGATTTAATCGGGATGTAAGCCGCACCACTGATTGTGTT 1901
Query 1558 ATCTGCATGACTGCTATTGATCTCAGACAGCATACCAGTGATTTCATGATAACTCCATGT 1617
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1902 ATCTGCATGACCGCTATTGATCTCAGACAGCATACCAGTGATTGCATGGTAACTCCATGT 1961
Query 1618 GAGCATTTCTTTCACTCGGGATGCTTACAGAGATGGATGGATATAAAAATGGAGTGTCCA 1677
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GAACATTTCTTTCACTCGGGATGCTTACAGAGATGGATGGATATAAAAATGGAGTGTCCA 2021
Query 1678 ACTTGTCGGCGTTCTCTTCCTCCAGCATAGAGGATGTTTTCAATTTGTTA 1727
||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2022 ACTTGTCGGCGGTCTCTTCCTCCAGCATAGAGGATGTTTTCGGTTTGTTA 2071
> AT2G20650.1 | Symbols: | RING/U-box superfamily protein | chr2:8903676-8907339
REVERSE LENGTH=2189
Length=2189
Score = 1598 bits (865), Expect = 0.0
Identities = 1395/1652 (84%), Gaps = 32/1652 (2%)
Strand=Plus/Plus
Query 68 TCTTCTGGTTATCGATTTGGTTGGCGATTTC-GCAACAAGC-GCTGGGATTGAGACCCAT 125
|||||| ||||| |||||||| ||| ||| ||||||||| | ||| | ||||||||
Sbjct 363 TCTTCTCCTTATCTATTTGGTTTGCG-GTTCTGCAACAAGCTAAT-GGACTCAGACCCAT 420
Query 126 AAGGGAGAAAACTCGATCATGGAGTGACGAGTGGCTCTTTGGTAGGAAACAAGAAGCTGA 185
|||||||| |||| || ||| | || |||||||||||||| | ||| || ||| ||
Sbjct 421 AAGGGAGACTGCTCGGTCCTGGGGCGATGAGTGGCTCTTTGGCAAAAAAGAAAAAGGTGG 480
Query 186 AGTAGGACCGTTTTCTGCATGGAATATAACAGGAACGTATAGAGGAACTTGGAAGTTTCT 245
|| ||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct 481 AGCAGGACCGTTTTCTGCGTGGAATATAACAGGAACATATAGAGGCACATGGAAGTTTCT 540
Query 246 GA-ATTCCGTCAATAGCTCTTCGAAGTTTCAAGACTTTCA-AAAAGAAAATGGTAATTCT 303
| || | || ||||||||||| ||||||| ||| ||||| |||||||| |||||| |||
Sbjct 541 -AGATACTGTAAATAGCTCTTCAAAGTTTCCAGA-TTTCAGAAAAGAAAGTGGTAACTCT 598
Query 304 GTGGTTGAGTTAGTGGC-AGTTCCTACAAAGATAACCGGTGTGCATTATGTTCAGGGTGT 362
|| ||||||||||| | || ||| ||||| || || ||||||||||||||||||||||
Sbjct 599 GTCATTGAGTTAGTGACAAG-TCCAACAAAAATTACTGGTGTGCATTATGTTCAGGGTGC 657
Query 363 AGTTGTTTTCCATGACGTATTTGACAATGAACAAAATGTGGGTGGTGCCCAAA-TAAATC 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 658 AGTTGTTTTCCATGACGTATTTGACAATGAACACAATGTGGGTGGTGCCCAAATTAAA-G 716
Query 422 TGGAAGGTGTATATATATGGCCCTTTAGACAACTCCGCCTTGTGGCTAACAGCGGCAAGG 481
| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 717 TTGAAGGTGTATATATTTGGCCCTTTAGACAGCTCCGTCTTGTTGCTAACAGCGGAAAGA 776
Query 482 AGAGTGATTCAGGGCAAGAAGACAATAATCTTCTCTCAAATCCCTATCATCTGCTTGGAA 541
||||||||||||| | ||||||| || |||||||||| || |||||||||||||| || |
Sbjct 777 AGAGTGATTCAGGACTAGAAGACGATTATCTTCTCTCCAACCCCTATCATCTGCTCGGTA 836
Query 542 TTTTCTCCTCTCAAGTGTTTCAAGAATCTCCAAGAGACAGATTACTGAAAC-GGAAACTT 600
|||| ||||| ||||| |||||||||||||||||||||||| || |||||| | |||| |
Sbjct 837 TTTTTTCCTCCCAAGTATTTCAAGAATCTCCAAGAGACAGAATATTGAAACAGAAAAC-T 895
Query 601 TCTCCAGTAAATGAAATGGAGAAGCACTGTAACATCGAAATAGCAGCTCAAGTATCCCGC 660
|||||| || |||| |||||||||||||| || ||||||||||| || ||| ||||||
Sbjct 896 TCTCCAATATATGAGATGGAGAAGCACTGCAATATCGAAATAGCTGCCCAAATATCCC-A 954
Query 661 GTG-GCTTCTGGTGAAAATAATGGAGACAAAAATTATTATCACATGGAAGGATTGATGGA 719
| ||||| ||||||| ||||| |||||| || |||||| || ||||||||||||||
Sbjct 955 AAGCACTTCTAGTGAAAACAATGGGGACAAAGATCGTTATCAAATTGAAGGATTGATGGA 1014
Query 720 AAGTCCTGGGGTAGGCGATGACGGAGATTGTTTTTCCCCTTTGTTACTGAATGCAACTTC 779
|||||||| |||| ||||| | |||||||||||| || |||| ||||||||||| ||
Sbjct 1015 AAGTCCTGCAGTAGATGATGAAGTAGATTGTTTTTCGCCATTGTCGCTGAATGCAACCTC 1074
Query 780 TGTAAATGTCGAAGTCTACTATAACAAAGCTGTGAACTATACACTGATGGTCACTTTTAT 839
|||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 1075 CATAAACGTCGAAGTCTACTATAACAAGGCTGTGAACTATACATTGATGGTCACTTTTGT 1134
Query 840 CTCTTTCCTCCAGGTTCTTTTGTTGATCCGGCAAATGGAGCACGGTAACACACAATCTGG 899
||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 1135 CTCGTTCCTCCAGGTTCTTTTATTGATCCGGCAAATGGAGCACAGTAACACACAATCCGG 1194
Query 900 TGCTGCTAAGGTATCCATTGTAATGATTGGGCAACAAGCGATCATGGATGCTTATTTGTG 959
||| || ||||| || || |||||||| ||||||||||| ||||||||| ||||||| ||
Sbjct 1195 TGCCGCAAAGGTCTCTATAGTAATGATCGGGCAACAAGCCATCATGGATTCTTATTTATG 1254
Query 960 CCTCTTACATCTCACAGCCGGTATATTAGTCGAATCTCTGTTTAATGCATTTGCAACCGC 1019
||| |||||||||||||| || || ||||| ||||| |||||||| || |||||||| ||
Sbjct 1255 CCTTTTACATCTCACAGCTGGGATTTTAGTTGAATCCCTGTTTAACGCTTTTGCAACAGC 1314
Query 1020 TGCGTTCTTCAAATTCGTAGTCTTCTCGATTTTTGAGATGAGATATCTTCTGGCTATATG 1079
||||||||||||||| ||||| || ||||| ||||||||||||||||||||| | |||||
Sbjct 1315 TGCGTTCTTCAAATTTGTAGTGTTTTCGATATTTGAGATGAGATATCTTCTGTCCATATG 1374
Query 1080 GAAAGCAACCCGTCCTTCCAA-TAGCGGAGAGGGTTGGGAAACAATGAGGCGAGAACTGT 1138
|||||| ||| | |||| ||| ||||| ||||| ||||||||||||||||| || || |
Sbjct 1375 GAAAGCGACCAGGCCTT-CAACCAGCGGTGAGGGCTGGGAAACAATGAGGCGTGAGCTCT 1433
Query 1139 CCTTTCTGTACAGCCGTTTCTATGGGATCCTTCTTGGAGGCATTTTGA-TAATGTACCAG 1197
||||| ||||||||||||||||||| ||||||||||||||||| || | |||||||| ||
Sbjct 1434 CCTTTTTGTACAGCCGTTTCTATGGAATCCTTCTTGGAGGCATATT-ATTAATGTACGAG 1492
Query 1198 TTCCACAACTACATGCAGCCGATTCTCCTTCTCATGTACTCATTTTGGATACCACAAATA 1257
|||||||||||||||| |||||| ||||| |||||||||||||||||||| || || |||
Sbjct 1493 TTCCACAACTACATGCGGCCGATCCTCCTACTCATGTACTCATTTTGGATTCCCCAGATA 1552
Query 1258 GTTGCCAATGTCGTCCGGGATTCAAGAAAGCCTCTGCATCTGTATTATAT-CTTGGGCAT 1316
||||| || || || || ||||| ||||||||||||| | |||||||| || ||| ||
Sbjct 1553 GTTGCAAACGTTGTTCGTGATTCTCGAAAGCCTCTGCACCCATATTATATACTAGGG-AT 1611
Query 1317 GACAGCGACACG-GTTAGCTATACCGTTATATGTTTTTGGATGCCC-ACACAACTTCATG 1374
||| | ||||| || ||||||||||| ||||||||||| ||||| | | |||||||||
Sbjct 1612 GACTGTTACACGACTT-GCTATACCGTTGTATGTTTTTGGTTGCCCGA-AGAACTTCATG 1669
Query 1375 CGTGTAGAGCCCAACAAGGTCTGGTGTATATGCTTGTGCACATCCATGGGGTCGCAAGCT 1434
||||||||||||| ||||| ||||||| || || |||| ||| |||||||| ||||||
Sbjct 1670 CGTGTAGAGCCCAGCAAGGCCTGGTGTGTAAGCCTGTGTGCATTCATGGGGTTTCAAGCT 1729
Query 1435 -GTCATTCTTCTTCTTCAGCATTATTTTGGTTCACGCTGCTTTGTTCCC-CGTCAGATGC 1492
|| |||||||||||||||||||||| || || || ||||||| |||| || || |||
Sbjct 1730 GGT-GTTCTTCTTCTTCAGCATTATTTCGGGTCTCGTTGCTTTG-TCCCTCGAAAGTTGC 1787
Query 1493 TACCAGAGAAATACAACTACCACCGAAGATTTAATCGGGACGTAAGCCGCAA-CACTGAT 1551
|||| |||||||||| |||| || ||||| | ||| | |||| ||| || || ||
Sbjct 1788 TACCTGAGAAATACAGCTACTACAGAAGACTCGATCATAATGTAAACCG-AAGCAGGGAC 1846
Query 1552 TGCGTTATCTGCATGACTGCTATTGATCTCAGACAGCATACCAGTGATTTCATGATAACT 1611
||||| ||||||||||| | |||||||||||||| | || | ||||| |||| ||||
Sbjct 1847 TGCGTAATCTGCATGACCACGATTGATCTCAGACACCGTATTAATGATTGCATGGTAACG 1906
Query 1612 CCATGTGAGCATTTCTTTCACTCGGGATGCTTACAGAGATGGATGGATATAAAAATGGAG 1671
|| ||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1907 CCGTGTGAGCATATATTCCACTCGGGATGCTTACAGAGATGGATGGATATAAAGATGGAG 1966
Query 1672 TGTCCAACTTGTCGGCGTTCTCTTCCTCCAGC 1703
|| ||||| ||||| || | |||||||||||
Sbjct 1967 TGCCCAACATGTCGTCGCCCACTTCCTCCAGC 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5