BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945198
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28365.1 | Symbols: ENODL3, AtENODL3 | early nodulin-like pr... 966 0.0
AT4G32490.1 | Symbols: ENODL4, AtENODL4 | early nodulin-like pr... 490 7e-138
> AT4G28365.1 | Symbols: ENODL3, AtENODL3 | early nodulin-like
protein 3 | chr4:14032845-14033840 REVERSE LENGTH=919
Length=919
Score = 966 bits (523), Expect = 0.0
Identities = 640/692 (92%), Gaps = 25/692 (4%)
Strand=Plus/Plus
Query 1 ATTAACGTTTTGGATCGGAGATGGATTTGGTCATGAGGTTTGATCTTTACCTTATGTTTG 60
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 133 ATTAACGTTTTGCATCGGAGATGGGTTTGGTCATGAGGTTTGATCTTTACCTTATGTTTG 192
Query 61 TGATGTTGATGGGTATGGGGTTTAAGATATCAAATGGATACAAATTCTATGTTGGTGGGA 120
|||||||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 193 TGATGTTGATGGGTTTAGGGTTTACGATATCAAATGGATACAAGTTCTATGTTGGTGGGA 252
Query 121 AAGATGGTTGGGTCCCTACTCCTTCCGAAGATTATTCTCATTGGTCTCACCGGAACCGGT 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 253 AAGATGGTTGGGTCCCGACTCCTTCCGAAGATTATTCTCATTGGTCTCACCGAAACCGGT 312
Query 181 TTCAAGTCAACGACACTCTTCATTTTAAGTACGCGAAGGGAAAAGATTCAGTGTTGGAGG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 313 TTCAAGTCAACGACACTCTTCATTTTAAGTACGCCAAGGGAAAAGATTCAGTGTTGGAGG 372
Query 241 TGAGTGAACAAGAGTACAACACATGCAACACGACCCACCCCCTGACTTCCCTCTCAGACG 300
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 373 TGACTGAACAAGAGTACAACACATGCAACACGACACACCCCCTGACTTCCCTCTCAGACG 432
Query 301 GAGACTCTCTCTTTCTACTTAGCCACTCCGGTTCCTTCTTTTTCATTAGTGGCAACTCTC 360
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 433 GAGACTCTCTCTTCCTACTTAGCCACTCAGGTTCCTACTTTTTCATTAGTGGCAACTCTC 492
Query 361 AAAACTGTCTTAAAGGTCAGAAGCTAGCCGTCAAGGTCTTGTCTACCGTCCACCACAGCC 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 493 AAAACTGTCTTAAAGGTCAGAAGCTAGCCGTCAAGGTCTTGTCCACCGTCCACCACAGCC 552
Query 421 ACTCTCCTCGTCATACCTCTCCCTCCTCGTCTCCGTCACCGTCACTGTCTCCGGTCCATC 480
|||||||||||||||||||||||||| | | ||| || | | | ||||||
Sbjct 553 ACTCTCCTCGTCATACCTCTCCCTCC-C--C---GTC----TC-C-G-----G-TCCATC 594
Query 481 AGGATTTGTCTTCGCCGGTGCCTTCTCCAGGAGTGGAACCATCATCTGTAT-CAAACGCT 539
|||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 595 AGGAGTTGTCTTCGCCGGGGCCTTCTCCAGGAGTGGAACCATCATCTG-ATTCAAACTCT 653
Query 540 CATGCTCCAACTCCAGGGCCGGCTTCAGCTCGCAATTCGGCCGGTTTGGTTGGTCCGGGG 599
| || |||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 654 CGTGTTCCAGCTCCAGGACCGGCTACAGCTCCCAATTCGGCCGGTTTGGTTGGTCCGGGG 713
Query 600 ATGGGGGTTCTTGTGATTATGATAAGTTCTATGTTTAATTTGAGGGGTTTATATATTGTC 659
|||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 714 ATGGTGGTTCTTGTGATTATGATAAGTTCTCTGTTT--T--GAGGGGTTTATATATTGTC 769
Query 660 GCTAGTCATTAAATTTGTGAGGTGTATTGATT 691
|||||||||||||||||||||| ||||| |||
Sbjct 770 GCTAGTCATTAAATTTGTGAGG-GTATTAATT 800
> AT4G32490.1 | Symbols: ENODL4, AtENODL4 | early nodulin-like
protein 4 | chr4:15678647-15679652 REVERSE LENGTH=926
Length=926
Score = 490 bits (265), Expect = 7e-138
Identities = 439/519 (85%), Gaps = 28/519 (5%)
Strand=Plus/Plus
Query 1 ATTAACGTTTTGGATCGG--A--GATGGATTTGGTCATGAGGTTTGATCTTTACCTT-AT 55
||||| ||||||| |||| | ||||| ||| |||| | | |||| |||| ||| ||
Sbjct 73 ATTAAAGTTTTGGTTCGGATATTGATGGTTTTTGTCAAAATGACTGATGTTTA-CTTGAT 131
Query 56 GTTTGTGATGTTGATGGGTATGGGG-TT--TA-AGA--TATCAAATGGATACAAATTCTA 109
| ||||||||||||||||| ||||| || || ||| |||||||||| |||| |||||
Sbjct 132 GATTGTGATGTTGATGGGTTTGGGGTTTAGTATAGAGTTATCAAATGGGCACAAGTTCTA 191
Query 110 TGTTGGTGGGAAAGATGGTTGGGTCCCTACTCCTTCCGAAGATTATTCTCATTGGTCTCA 169
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 192 TGTTGGTGGGAGAGATGGTTGGGTCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCA 251
Query 170 CCGGAACCGGTTTCAAGTCAACGACACTCTTCATTTTAAGTACGCGAAGGGAAAAGATTC 229
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 252 CCGAAACCGGTTTCAAGTCAACGACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTC 311
Query 230 AGTGTTGGAGGTGAGTGAACAAGAGTACAACACATGCAACACGACCCACCCCCTGACTTC 289
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 312 AGTGTTGGAGGTGAGTGAAAAAGAGTACAACACATGCAACACGACTCACCCTTTGACTTC 371
Query 290 CCTCTCAGACGGAGACTCTCTCTTTCTACTTAGCCACTCCGGTTCC-TTCTTTTTCATTA 348
|||||||||||| ||||||||||| |||||||||| ||| | || ||||| ||| | |
Sbjct 372 CCTCTCAGACGGTGACTCTCTCTTCCTACTTAGCCGCTCAGAC-CCATTCTTCTTCGTCA 430
Query 349 GTGGCAACTCTCAAAAC-TGTCTTAAAGGTCAGAAGCTAGCCGTCAA-GGTCTTGTCTAC 406
| |||||||| | | | ||||| |||||||| ||||||||||| || |||| |||||||
Sbjct 431 GCGGCAACTC-CGGATCCTGTCTCAAAGGTCAAAAGCTAGCCGT-AACGGTCATGTCTAC 488
Query 407 CGTCCACCACAGCCACTCTCCTCGTCATACCTCTCCCTCCTCGTCTCCGTCACCGTCA-C 465
|| |||||||||||| ||||||||||| ||||||| ||| | | ||| | || ||| |
Sbjct 489 CGGACACCACAGCCACACTCCTCGTCATCCCTCTCCTTCCCC-T-TCC--C-CC-TCAGC 542
Query 466 TGTCTCCGGTCCATCAGGATTTGTCT-TCGCCGGTGCCT 503
||||||||||| | ||| ||||| | ||||| | ||||
Sbjct 543 -GTCTCCGGTCCGTAAGGCTTTGT-TATCGCCAGCGCCT 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5