BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945213
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:1... 2793 0.0
> AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13992997-13995831
FORWARD LENGTH=1977
Length=1977
Score = 2793 bits (1512), Expect = 0.0
Identities = 1680/1761 (95%), Gaps = 12/1761 (1%)
Strand=Plus/Plus
Query 7 AGACTCTTCACCAGAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCCCCA 66
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 67 AGACTTTTCACCAAAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCTCCA 126
Query 67 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACTCA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 127 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACGCT 186
Query 127 GATTCTAACGCAGAAGCTAACAAAAACGAGGACCAGCAGCTGAAGAAGAAGAAAGTAGTT 186
||| |||||| ||||||||||||||| |||| |||| | ||||||||||||||||||
Sbjct 187 GATGCTAACGAAGAAGCTAACAAAAAGGAGG---AGCA--T-AAGAAGAAGAAAGTAGTT 240
Query 187 GTACTTGGGACTGGATGGGCTGGTATAAGCTTT-CTTAAAGATCTCGACATTACTTCCTA 245
|| ||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 241 GTGCTTGGGACTGGTTGGGCTGGTATAAG-TTTCCTTAAAGATCTCGACATAACTTCCTA 299
Query 246 CGATGTTCAGGTTGTGTCTCCACAGAACTACTTTGCCTTTACACCATTGTTACCTAGCGT 305
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGATGTTCAGGTTGTGTCTCCCCAGAACTACTTTGCCTTTACGCCATTGTTACCTAGCGT 359
Query 306 CACTTGTGGAACTGTTGAAGCTAGAAGTATTGTAGAGTCTGTCCGTAATATAACaaaaaa 365
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 360 CACTTGTGGAACTGTTGAAGCTAGAAGCATTGTGGAGTCTGTCCGTAATATAACCAAGAA 419
Query 366 gaaaaaTGGGGAAATTGAATTATGGGAAGCAGATTGTGTTAAGATCGATCCTGTTAACCA 425
||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||
Sbjct 420 GAAAAATGGGGAAATTGAATTGTGGGAAGCAGATTGTTTTAAGATTGATCATGTTAATCA 479
Query 426 CAAGGTTCACTGTCGACCGGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAGTTTTCGCT 485
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 480 GAAGGTTCACTGTCGACCAGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAATTTTCCCT 539
Query 486 TGGATATGACTACTTGATTGTTGCAGTGGGAGCTCAAGTTAATACATTTGGCACTCCTGG 545
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 540 TGGATATGACTACTTGATCGTAGCAGTGGGAGCTCAAGTTAACACATTTGGCACTCCTGG 599
Query 546 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTGGAGGATGCACAGAGAATTCGTAGAGG 605
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 600 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTAGAGGATGCACAGAGGATTCGTAGAGG 659
Query 606 AGTGATTGATTGCTTTGAGAAAGCAATCCTTCCTGGCCTTACTGAGGAACAAAGAAGAAG 665
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 AGTGATTGATTGCTTTGAAAAAGCAATCCTTCCTGGCCTCACTGAGGAACAAAGAAGAAG 719
Query 666 AAAGCTTCATTTTGTTATTGTGGGAGGAGGTCCAACTGGTGTGGAGTTTGCAGCTGAGCT 725
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 AAAGCTTCATTTTGTAATCGTGGGAGGAGGTCCTACTGGTGTGGAGTTTGCAGCTGAGCT 779
Query 726 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTGAA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTAAA 839
Query 786 AATAACACTCATTCAATCTGGAGATCATATTCTGAATTCGTTTGATGAACGTATAAGTTC 845
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 840 AATAACACTCATTCAATCTGGAGACCATATTCTGAATACGTTTGATGAACGTATCAGTTC 899
Query 846 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACAGGAATGCGTGTAAT 905
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACTGGAATGCGTGTAAT 959
Query 906 GTCTGTGACTGATAAAGATATCACTGTGAAAGTCAAATCAAGTGGAG-ACGTCGTAAGTA 964
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 960 GTCTGTGACTGATAAAGATATCACAGTGAAAGTCAAATCAAGTGGAGAAC-TCGTAAGTA 1018
Query 965 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1078
Query 1025 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGTTGGCAACTAACGAGTGGTTACAAG 1084
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGGTGGCAACTAACGAGTGGTTACAAG 1138
Query 1085 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1198
Query 1145 TCATGGGGGATATTGCAAACATATTCAAAGCTGCAGATGTGGACAACTCAGGAACCTTGA 1204
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1199 TCTTGGGGGATATTGCAAACATATTCAAAGCTGCAGATGCGGACAACTCAGGAACCTTGA 1258
Query 1205 CCATGGAAGAGTTACAAGACGTGGTTGATGATATTCTTGTGAGGTACCCGCAGGTGGAGC 1264
|||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 1259 CCATGGAAGAGTTAGAAGGCGTGGTTGATGATATTATTGTGAGGTATCCGCAGGTGGAGC 1318
Query 1265 TCTACCTGAAAAGCAAGCATATGAGGAATATTAACGATCTGCTGGCAGATTCTCAAGGAA 1324
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1319 TCTACCTGAAAAGCAAGCATATGAGGCATATTAACGATCTGCTGGCAGATTCTGAAGGAA 1378
Query 1325 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCGCGGAGGTTGATTCAC 1384
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1379 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCTCGGAGGCTGATTCAC 1438
Query 1385 AGATGAAGACCCTGCCTGCAACTGCTCAGGTCGCTGCACAGCAAGGTGCTTATCTTGCAA 1444
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 AGATGAAAACCCTGCCTGCAACTGCTCAGGTCGCTGCCCAGCAAGGTGCTTATCTTGCAA 1498
Query 1445 AATGCTTCAACAGGATGGAGCAGTGCAAAGAGCAACCTGAAGGTCCTAAGCGCTTTAGAA 1504
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 1499 AATGCTTCAACAGGATGGAGCAGTGTAAAGAGCTACCTGAAGGTCCTAAGCGCTTCAGAA 1558
Query 1505 CTGGCGGGCATCACCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAT 1564
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CTGGCGGGCATCATCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAC 1618
Query 1565 TGGGAGGGGACCAAGCAGCTGCCGAATTACCTGGAGACTGGGTTTCAGCTGGAAGAAGCG 1624
| ||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||
Sbjct 1619 TAGGAGGGGACCAAGCAGCAGCTGAACTACCTGGAGACTGGGTTTCAGCTGGAAAAAGCG 1678
Query 1625 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGAGCTC 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1679 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGGGCTC 1738
Query 1685 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGACTCAAGCCGCATCTGAG 1744
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1739 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGATTCAAGCCGCATCTGA- 1797
Query 1745 C-CAATACTGCATCTTATAAT 1764
| ||||||||||| || ||||
Sbjct 1798 CTCAATACTGCATTTTGTAAT 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5