BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945215
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28200.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2950 0.0
> AT4G28200.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: RNA processing; LOCATED IN: intracellular;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein,
HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated
protein 6 (InterPro:IPR013949); Has 492 Blast hits
to 480 proteins in 206 species: Archae - 0; Bacteria - 2;
Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other
Eukaryotes - 111 (source: NCBI BLink). | chr4:13987602-13990450
REVERSE LENGTH=2181
Length=2181
Score = 2950 bits (1597), Expect = 0.0
Identities = 1875/2008 (93%), Gaps = 24/2008 (1%)
Strand=Plus/Plus
Query 1 CCGCCGAGAATCGAGAAGCAGCAGCAATGGCCGACGTAGTTCAATACCGCCTCGAGCGGA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3 CCGCCGAGAATCGAGAAGCAGCAGCCATGGCCGACGTAGTTCAATACCGCCTCGAGCGGA 62
Query 61 TGGTTGACGAGCTTGATGATCTAGAACGAAGAGGAATCTTCACTCGTGCAGAGATAGCTG 120
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 63 TGGTTGACGAGCTTGATGATCTAGAACGAAGAGAAATCTTCACTCGTGCTGAGATAGCTG 122
Query 121 AGATCGTGAAGCAGCGCCGTAAGTTCGAGTACCGGCTAAAGCGTCCAAGCCCTCTCAAAG 180
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 123 AGATCGTGAAGCAGCGGCGTAAGTTTGAGTACCGGCTCAAGCGTCCAAGCCCACTCAAAG 182
Query 181 AAGATTTCATAGCCTATATTGACTATGAGGTTAAGCTCGATGAGCTCCGCCAGCTACGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 183 AAGATTTCATAGCCTATATTGACTATGAGGTTAAGCTCGATGAGCTCCGTCAGCTACGGA 242
Query 241 GGAAAGCGGTGGCTTATGAGTCTAAGAAGAGAAAGAAGAAATCGGTTTCTGATTTCGCCG 300
||||| ||||||| || | |||||||||||||||||||||| || |||||||||||||
Sbjct 243 GGAAATCGGTGGCGCGTGTGACTAAGAAGAGAAAGAAGAAATCAGTATCTGATTTCGCCG 302
Query 301 GTGTGGCTAGGATTGTTGAGATTTATAGATTGGCGACTATGAGGTATAAAGGGGATATCA 360
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 303 GTGTGGCTAGGATTGTTGAGATTTATAGATTGGCGACGATGAGGTATAAAGGTGATATCA 362
Query 361 ATTTGTGGTTTAGGTATCTCGAGTTTTGTAAACAGAAGAGGCATGGAAGAATGAAGAAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 363 ATTTGTGGTTTAGGTATCTCGAGTTTTGTAAACAGAAGAGGCATGGAAGAATGAAAAAGG 422
Query 421 CTTTGGCTCAAGCAATAAGGTTTCATCCAAAAGTGGCTGGAGTGTGGATATATGCTGCGT 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 423 CATTGGCTCAAGCAATAAGGTTTCATCCAAAAGTGGCTGGAGTGTGGATATATGCTGCAT 482
Query 481 CTTGGGAATTTGATAGAAACTTGAATGTTACTGCAGCTCGTGCTCTCATGCTGAATGGGC 540
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 483 CTTGGGAATTTGATAGAAACTTGAATGTTACAGCAGCTCGTGCTCTTATGCTGAATGGGC 542
Query 541 TGAGAGTTTGTTCAAACTCTGAAGACTTGTGGGTGGAGTATCTGCGGATGGAACTTACTT 600
||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 543 TGAGAGTGTGTTCAAACTCTGAAGACCTGTGGGTTGAGTATCTGCGAATGGAACTTACTT 602
Query 601 ACCTAAATAAGCTGAAAGCTCGTAGAGTTGCCCTTGGTGAA-AGTAAAGGTAGTTTGGTG 659
|||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||
Sbjct 603 TTCTAAATAAGCTGAAAGCTCGTAAAGTTGCCCTTGGTGAAGA-TAAAGGAAGTTTGGTG 661
Query 660 CGTGACACGAAATCCGTCGAGGATGAGAAATGGAAAGATGAAAACAAAGAGTTGTTTATG 719
|||||||||||| |||| ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 662 CGTGACACGAAAACCGTTGAGGATGAGCAATGGAAAGATGAGAACAAAGAGTTATTTATG 721
Query 720 TCGCTAGATGAGAAAGAAGGAAATGAAAAAGAAGAGGATGGGGAGGAGGACTCTAATGTT 779
|||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||
Sbjct 722 TCGCTAGATGAGAAAGAAGGAAATGAAAAAGAAGAGAATG---ACGAGGACTCTATTGTC 778
Query 780 GAAGATGCTAAGGATGTGACTGAGAAAGTTGATGTTTTTCGG-GAAAAAGGGTCCAATGT 838
||||||| | ||||||||||||||||||||||| || || || ||||||||||||||
Sbjct 779 GAAGATGTTGAGGATGTGACTGAGAAAGTTGAT-TTCTTAAAAGAGAAAGGGTCCAATGT 837
Query 839 TCTTCAGACAATCTATAGTGGTGCCATTGAGGCTCTTCCATCTAGTTTTGACTTGAGGAA 898
||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 838 TCTTCAGACCATCTATAGTGGAGCCGTTGAGGCTATTCCATCTAGTTTTGACTTGAGGAA 897
Query 899 GCGTTTTTTGGAGATTCTAGAGGCAACGGACTTGGCGCATTCAGATGAAATCCGCAATAC 958
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 898 GCGTTTTTTGGAGATTCTAGAGGCAACAGACTTAGCGCATTCAGATGAAATGCGCAATAC 957
Query 959 GATTCTTAGTGACCTGAAGCGTGACTTTTGCAAGGAACCTGAATACTGGAATTGGCTTGC 1018
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 958 CATTCTAAGTGACCTGAAGCGTGATTTTTGCAATGAACCTGAATACTGGAATTGGCTTGC 1017
Query 1019 AAGACATGAAATGAGTGGTTGTATTAGCAAAGAGACTGGCCTAGAGTTTTCTAATCCTCA 1078
|||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||||||
Sbjct 1018 AAGACATGAAATGAGTGGTTGTATTAGCAATGAGGCAGGCCTAGAGTTTGCAAATCCTCA 1077
Query 1079 AATGCAAAAGGCTATTCAGGTTTTTGAAGAGGGCTTGCAAACTGTTACTTCAAGTTCTAT 1138
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1078 AATGCAAAAGGCTATTCAGGTTTTTGAAGAAGGCTTGCAAACTGTTACGTCAAGTTCTAT 1137
Query 1139 GTTTGAGATTTATATAAAGTTTT-TGATGGAGGCTATTGCACAGTCAAATGGTGACGATG 1197
|||||||||||||||||| |||| ||||||||||||||| ||||||||| || ||||| |
Sbjct 1138 GTTTGAGATTTATATAAA-TTTTCTGATGGAGGCTATTGTACAGTCAAACGGCGACGA-G 1195
Query 1198 A-TGAAATTTC-TCCTTCGTCTAATTCTATTGGGGACTGCATTTCGCATGTCATAAACGT 1255
| |||||| || || || ||||||| | | | | |||||| ||| ||||||||||
Sbjct 1196 AATGAAATCTCCTCTTT-GTCTAATCC----G---A-T-CATTTCACATATCATAAACGT 1245
Query 1256 GTACCAAAAGGCTGATGAAACCGGGTGTTTGACTGAGGAGCTTGCTGATGAATATGTTTC 1315
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1246 GTACCAAAAGGCTGATGAAACTGGCTGTTTGACTGAAGAGCTTGCTGATGAATATGTTTC 1305
Query 1316 TCTGTATTTGAAACTGGGAAAGACTCATGAAGCTCAGAAGCTAGCAGAAAAATTTTGCTC 1375
|||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1306 TCTGTACTTGAAACTGGAAAAGACTCATGAAGCTCAGAAGCTAGCAGAAAAGCTCTGCTC 1365
Query 1376 TGGAAAATTTGCTGGATCAGCTAAGTTGTGGCTTTCAAGAGTTTCCATTGAAATAAGATC 1435
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TGAAAAATTTGCTGGATCAGCTAAGTTGTGGCTTTCAAGAGTTTCCATTGAAATAAGATC 1425
Query 1436 ACTTTCAGGGAACTCAACTCCTAGTAAAGCAGATTTGCAGACAGTTTTTGAGCTCCTTTC 1495
|||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1426 ACTTTCAGAGAACTCATCTCCTAGTAAAGCAGATTTTCAGACAGTCTTTGAGCTCCTTTC 1485
Query 1496 AAATGCTTTGAGGAAAGTACCTATCTCAGAATCTGAGAGCTTGTGGCTAATGGCTTTTAA 1555
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AAATGCTTTGAGGAAAGTACCGATCTCAGAATCTGAGAGCTTGTGGCTAATGGCTTTTAA 1545
Query 1556 ATTCTTTGCTCATCAGAAAACTTATTTGGACAAACTTGTAGAGATGTCCATCCTATTAGC 1615
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1546 TTTCTTTGCTCATCAGCGAACTTATTTGGACAAACTTGTAGAGATGTCCATCCTATCAGC 1605
Query 1616 AACCAAAAGCCATGGGAGCAACCATGTGTTTTCACTTTCTTCCACGGTGGTGAAATTTGT 1675
||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1606 AACCAAAAGCCATGGGAGCGACCATGTGTTTTCTCTTGCTTCCACAGTGGTGAAATTTGT 1665
Query 1676 TCTTGAAACAAAAGGGGGCCACAGTGCGAGGAAGATATACAAGAGGTTCTTGGCTCTTCC 1735
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TCTTGAAACAAAAGGGGCCCACAGTGCGAGGAAGATATACAAGAGGTTCTTGGCTCTTCC 1725
Query 1736 TGGTCCCAGTCTTGTTCTATACAAAGATTGCATTGAAATAGAGACAAACCTTATATCAGT 1795
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1726 TGGTCCCAGTCTTGTTCTATACAAAGGTTGCATTGAAATAGAGACCAACCTCATATCAGT 1785
Query 1796 GGGTGATAAAGATGGTCTCAGTAATGCCCGGAAGCTGTATGATTCTGCTGTTGCAAGTTA 1855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 AGGTGATAAAGATGGTCTCAGTAATGCCCGGAAGCTGTATGATTCTGCTGTTGCAAGTTA 1845
Query 1856 CAGTCAAGGCGTGGAGCTGTGGAAGAATTACTACTTATTGGAGACAAAGATGGGAACATC 1915
| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1846 CGGTCAAGACGTGGAGCTGTGGAAGAATTACTACTCATTGGAGACAAAGCTGGGAACATC 1905
Query 1916 AGAGACGGCCAATGGAGTGTATTGGCGGGCGAGAAAGACTCTGAAGGAATCGGCGGATTT 1975
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1906 AGAGACAGCCAATGGAGTGTATTGGCGTGCGAGAAAGACTCTGAATGAATCCGCGGATTT 1965
Query 1976 CATAGTTTGATCT--GATTTGTAGGTAG 2001
||||||||||||| ||||| |||||||
Sbjct 1966 CATAGTTTGATCTCTGATTTATAGGTAG 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99346878555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5