BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945218

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28170.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   562    8e-160


> AT4G28170.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G11120.2); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:13981635-13982837 FORWARD LENGTH=694
Length=694

 Score =  562 bits (304),  Expect = 8e-160
 Identities = 351/374 (94%), Gaps = 2/374 (1%)
 Strand=Plus/Plus

Query  3    GTCTCTTTCCAGTTACAAATGAGCAGCCACGACCATCGAAGGTTTGGAACGGCGGGTCCT  62
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  79   GTCTCTTTCCAGTTACAAATGAGCAGCCACGACCATAGAAGGTTTGGAACGGCGGGTCCT  138

Query  63   TTAGCAGCCGG-GGAAGAAGGAGAAGGACGTTTTGAGAGCTCGGTGAATGCGGTGCCGTT  121
            ||||| | |||  ||||||||  |||||||||||||||||||||||||||||||||| ||
Sbjct  139  TTAGCTG-CGGACGAAGAAGGTCAAGGACGTTTTGAGAGCTCGGTGAATGCGGTGCCATT  197

Query  122  TGGTTTGGTTGCGACCGGAGTTTTAATCGCTATCTTCCTCTTAATTGCTATTTTTGAGAG  181
            |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct  198  TGGTTTGGTTGCGACCGGAGTTTTGATTGCTATCTTCCTCTTAATTGCTTTTTTTGAGAG  257

Query  182  GTTCATCTTCATTAGTCCAACTCAATCACCACCTCTCGACCAAAAGTTTCCTCCTTTTGC  241
            |||||| ||| |||  ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  258  GTTCATGTTCGTTAAACCAACTCCATCACCACCTCTCGACCAAAAGTTTCCTCCTTTTGC  317

Query  242  TTCCCCCAAGATGGATGTGTGTAAGAGAGAGATATCGGTGTTGATGCCTGGAGAAGATGT  301
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  318  TTCCCCCAAGATGGATGTGTGTAAAAGAGAGATATCGGTGTTGATGCCTGGAGAAGATGT  377

Query  302  CCCAACTTTCATTGCTCAGCCATGTCCTTCTTCATCATCATCAAGCTCTTTCTGAAACCT  361
            |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  378  CCCAACGTTCATTGCTCAGCCATGTCCTCCCTCATCATCATCAAGCTCTTTCTGAAACCT  437

Query  362  TCTTGAATTTCATT  375
            ||||  || |||||
Sbjct  438  TCTTTCATCTCATT  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5