BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945230 Length=278 Score E Sequences producing significant alignments: (Bits) Value AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 466 5e-131 AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 292 9e-79 > AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr4:13943872-13945773 REVERSE LENGTH=554 Length=554 Score = 466 bits (252), Expect = 5e-131 Identities = 264/270 (98%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 9 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTT 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 159 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTTCGGTT 218 Query 69 TCCAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 128 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 TCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 278 Query 129 AACTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 188 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 279 AACTGCAAAAGGTGAGGATGCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 338 Query 189 CTGCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGG 248 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 339 CTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACATTCCCTGG 398 Query 249 CCCTCTTTGATTCAAACAAGAATCTCTCTT 278 |||||||||||||| ||||||||||||||| Sbjct 399 CCCTCTTTGATTCACACAAGAATCTCTCTT 428 > AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr5:23426668-23427856 FORWARD LENGTH=541 Length=541 Score = 292 bits (158), Expect = 9e-79 Identities = 218/248 (88%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 11 TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTTTC 70 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 75 TCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATTTCCGGTTTC 134 Query 71 CAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCACAA 130 | ||||| || ||||| |||||||||||||| || ||||| ||||| |||||||| |||| Sbjct 135 CTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACAGGTGTACAA 194 Query 131 CTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCTCT 190 ||||||| || ||||| || ||||| || || ||||| |||||||| ||||| || |||| Sbjct 195 CTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACCGTGCCCTCT 254 Query 191 GCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGGCC 250 | |||||||||||||||||||||||||| ||||||||||||| ||||| || || || | Sbjct 255 GTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTTTTCCAGGTC 314 Query 251 CTCTTTGA 258 |||||||| Sbjct 315 CTCTTTGA 322 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12768008246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5