BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945230
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 466 5e-131
AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 292 9e-79
> AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib family
protein | chr4:13943872-13945773 REVERSE LENGTH=554
Length=554
Score = 466 bits (252), Expect = 5e-131
Identities = 264/270 (98%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 9 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTT 68
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 159 TTTCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTTCGGTT 218
Query 69 TCCAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 128
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCAC 278
Query 129 AACTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 188
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AACTGCAAAAGGTGAGGATGCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCT 338
Query 189 CTGCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGG 248
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 339 CTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACATTCCCTGG 398
Query 249 CCCTCTTTGATTCAAACAAGAATCTCTCTT 278
|||||||||||||| |||||||||||||||
Sbjct 399 CCCTCTTTGATTCACACAAGAATCTCTCTT 428
> AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib family
protein | chr5:23426668-23427856 FORWARD LENGTH=541
Length=541
Score = 292 bits (158), Expect = 9e-79
Identities = 218/248 (88%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 11 TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTTTC 70
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 75 TCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATTTCCGGTTTC 134
Query 71 CAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCACAA 130
| ||||| || ||||| |||||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 135 CTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACAGGTGTACAA 194
Query 131 CTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCTCT 190
||||||| || ||||| || ||||| || || ||||| |||||||| ||||| || ||||
Sbjct 195 CTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACCGTGCCCTCT 254
Query 191 GCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGGCC 250
| |||||||||||||||||||||||||| ||||||||||||| ||||| || || || |
Sbjct 255 GTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTTTTCCAGGTC 314
Query 251 CTCTTTGA 258
||||||||
Sbjct 315 CTCTTTGA 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12768008246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5