BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945231
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942257-1394... 1279 0.0
> AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942257-13943732
REVERSE LENGTH=1212
Length=1212
Score = 1279 bits (692), Expect = 0.0
Identities = 794/842 (94%), Gaps = 11/842 (1%)
Strand=Plus/Plus
Query 8 TTTTTATTTCCGCCGG---AGAAA---ATGGTTCAGTGTAGCAACAACCTCCTCGGAATC 61
|||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||
Sbjct 85 TTTTTATTTCCGCCGGAACAAAAAGCGATGGTTCAGTGTAGCAACAATCTCCTCGGAATC 144
Query 62 CTCAATTTCTTCACTTTCCTTCTCTCAATCCCAATTCTCTCCGCCGGGATCTGGCTCGGC 121
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 145 CTCAATTTCTTCACATTCCTCCTCTCAATCCCAATTCTCTCCGCCGGGATCTGGCTCGGC 204
Query 122 AAAAATGCAGCTACCGAATGCGAACGTTTTCTCGACAAACCAATCGTCGTACTCGGAATC 181
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 205 AAAAATGCAGCAACCGAATGCGAACGTTTCCTCGACAAACCAATGGTCGTACTCGGAATC 264
Query 182 TTCCTCATGTTCGTCTCAATCGCCGGACTCGTCGGTGCTTGTTGCCGTGTCTCTTGCCTT 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TTCCTCATGTTCGTCTCAATCGCCGGACTCGTCGGTGCTTGTTGCCGTGTCTCTTGCCTC 324
Query 242 CTCTGGCTTTACCTCTTCGCTATGTTCCTCCTCATTCTCCTCGGCTTCAGCTTCACAATC 301
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 325 CTCTGGCTTTACCTCTTCGCTATGTTCCTCCTCATTCTCCTCGGCTTCTGTTTCACAATC 384
Query 302 TTCGCATTCGCCGTCACTAACCGCGGCGCCGGCGAGGTTATATCAGATCGAGGGTATAAA 361
||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 385 TTCGCTTTCGCAGTCACAAACCGCGGCGCCGGTGAGGTTATATCGGATCGAGGGTATAAA 444
Query 362 GAGTATCATGTCGGCGATTACTCAAATTGGCTGCAGAAACGTGTCACCAATGCTAAGAAT 421
||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 445 GAGTATCATGTCGCCGATTACTCTAATTGGTTGCAGAAACGTGTCAACAATGCTAAGAAT 504
Query 422 TGGGAACGGATCAGGAGTTGTTTGATGTACTCGGACGTTTGCTCCACTTATCGCACTCGT 481
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 505 TGGGAACGGATCAGGAGTTGTTTGATGTACTCTGACGTTTGCTCCACTTATCGTACTCGT 564
Query 482 TATTCCAGCATTAACGTTGAAGAATTCTACAAGGCTAATCTTAATGCTCTTCAGTCTGGT 541
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 565 TATGCCAGCATTAACGTTGAAGATTTCTACAAATCTAATCTTAATGCTCTTCAGTCTGGT 624
Query 542 TGTTGTAAGCCGTCCAATGACTGTAACTTCACCTATGTGAACCCGACTACTTGGACAAAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGTTGTAAGCCGTCCAATGACTGTAACTTCACCTATGTGAACCCGACTACTTGGACAAAG 684
Query 602 AC-CACTGGTCCATACAAAAACGAGGACTGTAATGTCTGGGACAACAAACCAGGAACTCT 660
|| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 ACTC-CTGGTCCATACAAAAACGAGGACTGTAATGTGTGGGACAACAAACCAGGAACTCT 743
Query 661 CTGCTACGACTGCGATGCCTGCAAGGCTGGTCTACTCGACAACATCAAGAACTCATGGAA 720
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 744 CTGCTACGACTGTGAAGCCTGCAAGGCTGGTCTGCTTGACAACATCAAGAACTCATGGAA 803
Query 721 AAAAGTGGCTCAGGTCAACATTGTTTTCCTCATATTCCTCATTATCGTCTACTCTGTTGG 780
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 804 AAAGGTGGCTAAGGTCAACATTGTCTTCCTCATATTCCTCATTATCGTCTACTCTGTTGG 863
Query 781 TTGTTGCGCGTTCAGGAACAACAGGAAACGCAGCTGGTATTAGATCTTTA-TGCGTTTGA 839
|||||| |||||||||||||||||||||||||| ||||| ||||| | || |||||| ||
Sbjct 864 TTGTTGTGCGTTCAGGAACAACAGGAAACGCAGTTGGTAATAGAT-TCTAATGCGTT-GA 921
Query 840 AA 841
||
Sbjct 922 AA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5