BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945237
Length=2169
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3236 0.0
> AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13930359-13933270 FORWARD LENGTH=2912
Length=2912
Score = 3236 bits (1752), Expect = 0.0
Identities = 2023/2157 (94%), Gaps = 5/2157 (0%)
Strand=Plus/Plus
Query 15 ATCTTCCGATATGAGA-TTTGTGACATCGTCTGCGGCCGGTGAGATTTTCCGACGTGATG 73
||| |||||||||||| |||| ||||||| | || |||| ||||||| ||||||||||||
Sbjct 12 ATC-TCCGATATGAGATTTTG-GACATCGGCGGCCGCCGCTGAGATTCTCCGACGTGATG 69
Query 74 AGCTTGTAGTGAGACGGCTCTTGAGCCAACGTCTGTGCTCTAAACTTGTTAATACCTTCT 133
||| ||||||||| |||||||| || ||| ||| ||| ||||| |||||| | ||||
Sbjct 70 AGCACGTAGTGAGAAAGCTCTTGAACCCTCGTGTGTACTCCAAACTCGTTAATGCATTCT 129
Query 134 CTGAAACTGAAACCAAATTGAGATCGCTATGTGAGGATTCAAATCCTCAGCTCAAGAATG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTGAAACTGAAACCAAATTGAGATCGCTATGTGAGGATTCAAATCCTCAGCTCAAGAATG 189
Query 194 CCGTTTCAGTTTTCCAGCAAGCAGTCGACTCCGGTGGCTCTCTTTCTTTCGCCGGAAATA 253
| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 190 CGGTTTCAGTTTTCCAACAAGCAGTCGACTCCGGTAGCTCTCTTGCTTTCGCCGGAAATA 249
Query 254 ATCTCATGGCAACGCTGGTACGCTCTAGAAACCACGAAGTAGCATTTTCATTTTACCGCA 313
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 ATCTCATGGCAAAGCTGGTACGCTCTAGAAACCACGAACTAGCATTTTCATTTTACCGCA 309
Query 314 AGATGCTTGAGACTGATACATTCATCAATTTCGTGTCGCTGAGTGGGTTACTTGAATGTT 373
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 310 AGATGCTTGAGACTGATACTTTCATCAATTTCGTGTCGCTGAGTGGGTTGCTTGAATGTT 369
Query 374 TTGTGCAAATGCGTAAGACTGGTTTTGCACACGGGGTTCTCGCATTGATGTTAAAGCGTG 433
|||||||||||||||||| || ||||| |||||||||||| |||||||| |||||||
Sbjct 370 ATGTGCAAATGCGTAAGACCGGGTTTGCGTTCGGGGTTCTCGCGTTGATGTTGAAGCGTG 429
Query 434 GGTTTGCTTTCAATGTGTATAATTATAATATCCTCTTAAAGGGTTTATGTAGGAATCTGG 493
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 430 GGTTTGCTTTCAATGTGTACAATCACAATATCCTCTTAAAGGGTTTATGTAGGAATCTGG 489
Query 494 AATTTGGTAAAGCTGTTAGTTTACTGAGAGAAATGAGACAAAACTCTCTGATGCCTGATG 553
||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 490 AATGTGGTAAAGCTGTTAGTTTACTGAGAGAAATGAGACGAAATTCTTTGATGCCTGATG 549
Query 554 TTGTTAGCTACAACACGGTTATTCGAGGTTTCTGCGAGGGAAAAGAGCTGGAGAAAGCAT 613
|| |||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||
Sbjct 550 TTTTTAGCTACAACACGGTTATTAGAGGCTTCTGCGAGGGAAAAGAGTTAGAGAAAGCAT 609
Query 614 TGCAATTAGCTAATGAAATGCAAGGCAGTGGCTGTTCTTGGAGTTTGGTGACTTGGGGGA 673
|| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 610 TGGAATTAGCTAATGAAATGAAAGGTAGTGGCTGTTCCTGGAGTTTGGTGACTTGGGGGA 669
Query 674 TTCTGATAGATGCCTTTTGCAAGGCTGGTAAGATGGATGAGGCGATGGGCTTGCTCAAAG 733
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 670 TTCTGATAGATGCCTTTTGCAAGGCTGGTAAGATGGATGAGGCGATGGGCTTTCTTAAAG 729
Query 734 AAATGAAACATAAGGGTTTAGAGGCAGATCTTATTGTGTATACTTCTCTGATTCGAGGGT 793
|||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 730 AAATGAAATTTATGGGTTTAGAGGCAGATCTTGTTGTGTATACTTCTCTGATTCGAGGGT 789
Query 794 TCTGTGATTGTGGTGAGTTAGATAGAGGGAAGGCGCTATTCGATGAGGTTCTGGAAAGAG 853
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 790 TTTGTGATTGTGGTGAGTTAGATAGAGGGAAGGCGCTCTTTGATGAGGTTCTGGAAAGAG 849
Query 854 GAGATTCTCCCTGTGCAATTACATATAACACGCTTATTCGAGGTTTTTGCAAGTTAGGAC 913
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 850 GAGATTCTCCCTGTGCGATTACATATAACACTCTAATTCGAGGTTTTTGCAAGTTAGGAC 909
Query 914 GGTTGAAAGAAGCCTCAGAGATTTTTGAGTTTATGATGGAGCGTGGAGTTCGCCCAAATG 973
||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 910 AGTTGAAAGAAGCCTCAGAGATATTTGAGTTTATGATAGAGCGTGGAGTTCGTCCAAATG 969
Query 974 TTTACACGTACACGGGTCTAATTGATGGCCTTTGCGGTGTAGGTAAGACTAAGGAAGCCC 1033
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 970 TTTACACGTACACGGGTCTAATCGATGGCCTTTGCGGAGTAGGTAAGACTAAGGAAGCCC 1029
Query 1034 TGCAACTTTTAAATCTGATGTTAGAGAAGGATGAAGAACCAAATGTTGTGACATATAACA 1093
|||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||
Sbjct 1030 TGCAACTTTTGAATCTGATGATAGAGAAGGATGAAGAACCGAATGCTGTGACTTATAACA 1089
Query 1094 TTATTATTAACAAGCTGTGCAAGGATAGCCTTGTAGCGGATGCTTTAGAAATTGTAGAGT 1153
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||
Sbjct 1090 TTATTATTAACAAGCTGTGCAAGGATGGCCTTGTGGCGGATGCTGTAGAAATTGTTGAGT 1149
Query 1154 TAATGAAGAAGAGGCGTACAAGACCTGATAACATAACATACAATAGTTTACTGGGAGGAC 1213
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1150 TAATGAAGAAGAGGCGTACAAGACCTGATAACATAACATACAATATTTTACTGGGAGGAC 1209
Query 1214 TCTGTGCCAAAGGTGACCTAGACGAAGCAAGTAAGCTTCTCTATTTAATGCTGAAAGATA 1273
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1210 TCTGTGCCAAAGGTGACCTAGACGAAGCAAGTAAGCTTCTCTATTTGATGCTGAAAGATA 1269
Query 1274 GTAGTTATACGGATCCAGATGTTATATCATTTAATGCGCTAATCCACGGGTTGTGCAAGG 1333
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1270 GTAGTTATACGGATCCAGATGTTATATCATATAATGCGTTAATCCACGGGCTGTGCAAGG 1329
Query 1334 GAAACCGTCTCCATCAAGCTTTAGATATTTATGATTTGCTGGTCGAGAAATTGGGTGCTG 1393
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1330 AAAACCGTCTTCATCAAGCTTTAGATATTTATGATTTGCTGGTTGAGAAATTGGGTGCTG 1389
Query 1394 GGGATATAGTTACCACTAATATATTGCTTAACAGCACTCTCAAGTCTGGAGATGTAAATA 1453
| |||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1390 GAGATAGAGTAACCACTAATATATTGCTTAATAGCACTCTCAAGGCTGGAGATGTAAATA 1449
Query 1454 AGGCAATGGAACTTTGGAAACAAATATCTAATTCCAAAATTGTTCCAAACTCAGATACAT 1513
||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
Sbjct 1450 AGGCAATGGAACTTTGGAAACAAATATCTGATTCCAAAATTGTTCGAAATTCAGATACCT 1509
Query 1514 ATACTACTATGATTGATGGGTTTTGCAAAACTGGCATGCTTAATGTTGCTAAAGGATTGC 1573
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 ATACCGCTATGATTGATGGGTTTTGCAAAACTGGCATGCTTAATGTTGCTAAAGGATTGC 1569
Query 1574 TTTGCAAAATGAGACTGTCTGAGCTACAGCCTAGTGTTTTCGACTACAACTGCCTACTGT 1633
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 1570 TTTGCAAAATGAGAGTGTCTGAGCTACAGCCTAGTGTTTTTGACTACAACTGTCTATTGT 1629
Query 1634 CATCATTATGCAAAGAGGGAACCTTAGACCAGGCATGGAGATTATTTGAGGAAATGCAGC 1693
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1630 CATCTTTATGCAAAGAGGGAAGCTTGGACCAGGCATGGAGATTATTTGAGGAAATGCAGC 1689
Query 1694 GTGATGACAGTTTTCCAGACG-TGATTTCTTTCAATATCATGATTGATGGAAGTCTTAAA 1752
||||| ||| |||||| |||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1690 GTGATAACAATTTTCCCGACGTTG-TTTCTTTCAATATTATGATTGATGGAAGTCTTAAA 1748
Query 1753 GCAGGGGATATTAAGTCTGCAGAATCACTTCTTGCGGGGATGTCTCATGCTGGTCTTTCC 1812
||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||
Sbjct 1749 GCAGGGGATATTAAGTCTGCAGAGTCACTTCTTGTTGGGATGTCTCGTGCTGGTCTTTCC 1808
Query 1813 CCTGATTTATTTACTTATTCGAAGTTGATAAATAGGTTCCTGAAACTTGGATATTTAGAC 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CCTGATTTATTTACTTATTCGAAGTTGATAAATAGGTTCCTGAAACTTGGATATTTAGAC 1868
Query 1873 GAGGCTATCAGTTTCTTTGACAAAATGATTGATAGCGGTTTTGAACCTGATGCTCATATT 1932
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1869 GAGGCTATCAGTTTCTTTGACAAAATGGTTGATAGCGGCTTTGAACCGGATGCTCATATT 1928
Query 1933 TGCGATTCTGTATTGAAGTATTGTATTTCACAGGGAGAAACAGACAAATTGACGGAATTT 1992
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1929 TGTGATTCTGTGTTGAAGTATTGTATTTCACAGGGAGAAACAGACAAGTTGACTGAACTT 1988
Query 1993 GTaaaaaaaCTGGTGGATAAAGATGTTGTCCTTGACAAAGAACTTACGTGTACGGTCATG 2052
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1989 GTAAAAAAACTGGTGGATAAAGATATTGTCCTGGACAAAGAACTTACGTGTACGGTCATG 2048
Query 2053 GATTACATGTGTAGCAGCTCAGGAAACATGGATATTGCAAAACGGTTGCTAAGAGTGGCA 2112
||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||
Sbjct 2049 GATTACATGTGTAACAGCTCAGCAAACATGGATCTTGCAAAGCGGTTGCTAAGAGTGACA 2108
Query 2113 GATGATAAAGAAGAAGGGGATAAGTGGGGTGCATAGTCATGCTCACTTATGCTAACT 2169
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 2109 GATGATAAAGAAGAAAGGGATAAGTAGGGTGCATAGGCATGCTCACTTATGCTAACT 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107579767935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5