BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945238

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28005.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   102    1e-21


> AT4G28005.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); 
Has 37 Blast hits to 37 proteins in 15 species: Archae 
- 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 33; Viruses 
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:13929655-13930191 
REVERSE LENGTH=348
Length=348

 Score =  102 bits (55),  Expect = 1e-21
 Identities = 61/64 (95%), Gaps = 0/64 (0%)
 Strand=Plus/Minus

Query  73   CAACGATCCCAGTCGTCTGCTTCACCTTCGCCAATTATGGCCGCCCGATCACACGCAGGA  132
            ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct  64   CAACGATCCCAGTCGTCTGCTTCACCTTCGCCAATAATGGCCGACCGATCACACGCTGGA  5

Query  133  ACAT  136
            ||||
Sbjct  4    ACAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5