BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945240

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27990.1 | Symbols: YLMG1-2, ATYLMG1-2 | YGGT family protein...   970    0.0  


> AT4G27990.1 | Symbols: YLMG1-2, ATYLMG1-2 | YGGT family protein 
| chr4:13923773-13924692 REVERSE LENGTH=920
Length=920

 Score =  970 bits (525),  Expect = 0.0
 Identities = 595/629 (95%), Gaps = 4/629 (1%)
 Strand=Plus/Plus

Query  28   CTCTTCGCGCTTCAATTCTCGCAAACCCTAGTCTAcctcctccgatcctccgtccccgtc  87
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  74   CTCTTCGCGCTTCAATTCTCGCAAACCCTAGACTACCTCCTCCGATCATCCGTCCCCGTC  133

Query  88   tctctcttccccgtaaaccctcattcaatctctccctccATAACCCTAGATCCATCGTCT  147
            |||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| |
Sbjct  134  TCTCTCTTCCCCGTAAACTCTCTTTCAATCTCTCCCTCCATAACGCTAGAACCATCGTTT  193

Query  148  CCTCCGCCGTTACCTCCTCGTCTCCGGTACTCTCCTCTAAACCCCCTTCTCAATTCCCCT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  194  CCTCCGCCGTTACCTCCTCGTCTCCGGTACTCTCCTCTAAACCCCCTTCTCAATTCCCCT  253

Query  208  TCTCCGACTCAACTAGATCGATCACCACCCTC-TCTCTTCTAGCTGGCGTCGTAACCAAA  266
            |||||||||||||||||||||||||||||||| |  |||||||| |||||||||| ||||
Sbjct  254  TCTCCGACTCAACTAGATCGATCACCACCCTCGTG-CTTCTAGCCGGCGTCGTAATCAAA  312

Query  267  TCCCTAATCCAGAAGCTCTCCGTCGCAATTGTAAACCTATCCCCACAGATTCAAGCATCT  326
            || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct  313  TCTCTAATTCAGAAGCTCTCTGTCGCAATTGTGAACCTATCTCCACAGATTCAAGCATCT  372

Query  327  ATCCGAACAGTGAGTCCGTTGTTCTTCGCGTCGCTCCGTGACCGACCCGCCGGTTATCTG  386
             |||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  373  TTCCGAACAGCAAGTCCGTTGTTCTTCGCGTCGCTCCGTGATCGACCCGCCGGTTATCTG  432

Query  387  AACACGCCACTT-ACAGTAGTTGCAGCGGGGCTATCGAAGTGGCTCGATATATACAGTGG  445
            ||||| ||  || || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  433  AACACTCCG-TTGACGGTAGTTGCAGCCGGGCTATCGAAATGGCTCGATATATACAGTGG  491

Query  446  TGTTCTAATGGTCAGAGTTTTGCTCAGTTGGTTCCCAAACATTCCATGGGATCGTCAGCC  505
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  492  TGTTCTGATGGTCAGAGTTTTGCTCAGTTGGTTCCCAAACATTCCATGGGATCGTCAGCC  551

Query  506  ATTGTCAGCCATTAGAGATCTGTGTGATCCTTATCTTAATCTCTTCAGGAACATTATTCC  565
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  552  TTTGTCAGCCATTAGAGATCTGTGTGATCCTTATCTTAATCTCTTCAGGAACATTATCCC  611

Query  566  TCCAGTCTTTGATACGCTTGACGTTAGCCCTTTGCTTGCTTTTGCCGTTTTGGGAACTCT  625
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  612  TCCAGTCTTTGATACGCTTGACGTTAGCCCTTTGCTTGCTTTCGCCGTTTTGGGAACTCT  671

Query  626  CGGTTCGATTCTCAACAACAGCAGATGAT  654
             |||||||||||||||||||||||| |||
Sbjct  672  AGGTTCGATTCTCAACAACAGCAGAGGAT  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32551727256


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5