BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945243
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | ... 824 0.0
AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 ... 610 4e-174
> AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9
| chr4:13915820-13917420 REVERSE LENGTH=909
Length=909
Score = 824 bits (446), Expect = 0.0
Identities = 476/491 (97%), Gaps = 0/491 (0%)
Strand=Plus/Plus
Query 10 GGATTTTGGATATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATC 69
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GGATTTTGGAAATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATC 266
Query 70 CTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCTACGA 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 267 CTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTA 326
Query 130 TAATGGGTCCATCGGAAAGCCCTTATTCTGGAGGAGTTTTCCTTGTAACCATCCATTTCC 189
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 327 TAATGGGTCCATCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCC 386
Query 190 CTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAA 446
Query 250 ACATTAATAGCAATGGGAGCATCTGTCTCGACATCTTGAAGGAGCAGTGGAGCCCTGCTC 309
||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 447 ACATTAACAGCAATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTC 506
Query 310 TGACAATTTCCAAGGTGCTGCTATCTATCTGTTCTTTGTTAACGGATCCAAACCCGGATG 369
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 507 TCACAATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATG 566
Query 370 ATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCA 626
Query 430 CTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAGATGCTGTCCTTGAGGAA 489
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 627 CTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAAATACTGTCCTTAAGGAA 686
Query 490 GAGCCCTAATA 500
|||||||||||
Sbjct 687 GAGCCCTAATA 697
> AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10
| chr5:21632514-21634229 REVERSE LENGTH=876
Length=876
Score = 610 bits (330), Expect = 4e-174
Identities = 413/454 (91%), Gaps = 2/454 (0%)
Strand=Plus/Plus
Query 13 TTTTGGATATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTC 72
||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 134 TTTTGGATATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCAC 193
Query 73 CTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCTACGATAA 132
|||| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||
Sbjct 194 CTACATCATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAA 253
Query 133 TGGGTCCATCGGAAAGCCCTTATTCTGGAGGAGTTTTCCTTGTAACCATCCATTTCCCTC 192
||||||| || || || |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 254 TGGGTCCTTCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTC 313
Query 193 CAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACA 252
| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 314 CGGATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACA 373
Query 253 TTAATAGCAATGGGAGCATCTGTCTCGACATCTTGAAGGAGCAGTGGAGCCCTGCTCTGA 312
|||| ||||| || ||||| || |||||||||||||||||||||||||| ||||| || |
Sbjct 374 TTAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCA 433
Query 313 CAATTTCCAAGGTGCTGCTATCTATCTGTTCTTTGTTAACGGATCCAAACCCGGATGATC 372
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 434 CCATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATC 493
Query 373 CTTTGGT-CCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACT 431
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 494 CTTTGGTGCCC-GAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACT 552
Query 432 GCTCGGACCTGGACCCAAAAGTATGCCATGGGCT 465
|| || | |||||| || ||||||||||||||||
Sbjct 553 GCACGAAGCTGGACTCAGAAGTATGCCATGGGCT 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23861219825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5