BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945244
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27950.1 | Symbols: CRF4 | cytokinin response factor 4 | chr... 1509 0.0
AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:1626381... 60.2 4e-08
> AT4G27950.1 | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909569-13910859
REVERSE LENGTH=1291
Length=1291
Score = 1509 bits (817), Expect = 0.0
Identities = 974/1046 (93%), Gaps = 26/1046 (2%)
Strand=Plus/Plus
Query 19 AGG-GATGTTGATGGATGAGTATATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 77
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 116 AGGTGATGATGATGGATGAGTTTATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 175
Query 78 CTGTTATCAGAAAGTACACTAAAAAGTCGTCCCTAGAGAAGAAGACCAGTGGTCGTGACT 137
||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||
Sbjct 176 CTGTTATCAGAAAGTACACTAAAAAGTCGTCTATGGAGAGGAAGACCAGTGTTCGTGACT 235
Query 138 CGGCGAGGTTGGTTCGGGTGTCTATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 197
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 236 CGGCCAGGTTGGTTCGGGTCTCAATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 295
Query 198 AGGAGGAGTTTTTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 257
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGGAAGAGTTTCTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 355
Query 258 AGCCT---AGCTCCTCCTCCGGCGACGTCTCTGCTTCTCCGATGAAGGACAGGAAAAGAC 314
||||| ||||| ||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 356 AGCCTAGCAGCTCTTCCACCGGCGACGTCTCTGCTTCTCCGACGAAGGACCGGAAAAGAA 415
Query 315 TCACCGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCTGGCCAAAACCAGAAGAAGTACC 374
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 TCAACGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCCGGCCAAAACCAGAAGAAGTACC 475
Query 375 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCGGAGCAAC 434
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 476 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCTGAGCAAC 535
Query 435 GCCGGAGAATCTGGCTCGGTACTTTTGCAACAGCGGAGGAAGCTGCTGTCGCCTACGACA 494
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 536 GCCGGAGAATCTGGCTCGGTACTTTTGCAACGGCGGAGGAAGCTGCCATCGTCTACGACA 595
Query 495 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTaccaacttcaccgtaccaccagaac 554
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACAACCAGAAC 655
Query 555 ccgaaccagaacccgaaccggaaccagaacaagaaccgGAGAGCAACATGTCGGTTTCGA 614
| ||||| | || || | ||| |||||||||||||||||||||||||||||||||||
Sbjct 656 CAGAACCGGTAC---AA--G-AACAAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 709
Query 615 TATCAGAATCAATGGACGACTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 674
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TATCAGAATCAATGGACGATTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 769
Query 675 AAACATATGTCTCGGAGGAGCCAATCGATAATCTTATCAAACCGGTTAAACAAGAGTTTC 734
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 770 AAACATATGTCTCGGAGGAACCAATCGATAGTCTTATCAAACCGGTTAAACAAGAGTTTC 829
Query 735 TTGAACCAGAACAAGAACCAATAAGCTGGCATCTTGGAGAAGGTAATAAC-AATA-T--T 790
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | |
Sbjct 830 TTGAACCAGAACAAGAGCCAATAAGCTGGCATCTTGGAGAAGGTAATA-CTAATACTAAT 888
Query 791 GATGATTCATTTCCATTGGACATTCCATTTCTCGACAACTATTTCAATGAATCACTACCC 850
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 889 GATGATTCATTTCCATTGGACATTACATTTCTCGACAACTATTTCAATGAATCATTACCA 948
Query 851 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAA--A-CAGAGAATGATTTGTTC 907
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 949 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAACCAACAGAGAATGATTTCTTC 1008
Query 908 AACGACCTTATGTTGTTTGATAACAACAACACAGAAGACA-ACGACTCTTCCGATATCAA 966
|||||||||||||| || |||| |||| || ||||| | || |||| ||||| |||||
Sbjct 1009 AACGACCTTATGTTATTCGATAGCAACG-CA--GAAGA-ATACTACTCCTCCGAGATCAA 1064
Query 967 AGAGATTGGTTCAAT-GTTCAACGATCTTGATGATTCTTTGATATCCGATCTTTTACTTG 1025
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1065 AGAGATTGGTTCA-TCGTTCAACGATCTTGATGATTCTTTGATATCCGATCTCTTACTTG 1123
Query 1026 TGTGATATTTTTGCCAT-AACAAAAC 1050
||||||||||||||||| ||| ||||
Sbjct 1124 TGTGATATTTTTGCCATTAACCAAAC 1149
> AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:16263813-16264818
FORWARD LENGTH=910
Length=910
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 389 CGACCATGGGGAAAATGGGCGGCGGAGATTCG 420
||||||||||||||||||||||||||||||||
Sbjct 375 CGACCATGGGGAAAATGGGCGGCGGAGATTCG 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5