BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945244 Length=1050 Score E Sequences producing significant alignments: (Bits) Value AT4G27950.1 | Symbols: CRF4 | cytokinin response factor 4 | chr... 1509 0.0 AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:1626381... 60.2 4e-08 > AT4G27950.1 | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909569-13910859 REVERSE LENGTH=1291 Length=1291 Score = 1509 bits (817), Expect = 0.0 Identities = 974/1046 (93%), Gaps = 26/1046 (2%) Strand=Plus/Plus Query 19 AGG-GATGTTGATGGATGAGTATATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 77 ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 116 AGGTGATGATGATGGATGAGTTTATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGA 175 Query 78 CTGTTATCAGAAAGTACACTAAAAAGTCGTCCCTAGAGAAGAAGACCAGTGGTCGTGACT 137 ||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| Sbjct 176 CTGTTATCAGAAAGTACACTAAAAAGTCGTCTATGGAGAGGAAGACCAGTGTTCGTGACT 235 Query 138 CGGCGAGGTTGGTTCGGGTGTCTATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 197 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 236 CGGCCAGGTTGGTTCGGGTCTCAATGACGGATCGTGACGCCACTGATTCATCAAGCGACG 295 Query 198 AGGAGGAGTTTTTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 257 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 AGGAAGAGTTTCTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCG 355 Query 258 AGCCT---AGCTCCTCCTCCGGCGACGTCTCTGCTTCTCCGATGAAGGACAGGAAAAGAC 314 ||||| ||||| ||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct 356 AGCCTAGCAGCTCTTCCACCGGCGACGTCTCTGCTTCTCCGACGAAGGACCGGAAAAGAA 415 Query 315 TCACCGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCTGGCCAAAACCAGAAGAAGTACC 374 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 416 TCAACGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCCGGCCAAAACCAGAAGAAGTACC 475 Query 375 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCGGAGCAAC 434 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 476 GCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCTGAGCAAC 535 Query 435 GCCGGAGAATCTGGCTCGGTACTTTTGCAACAGCGGAGGAAGCTGCTGTCGCCTACGACA 494 ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 536 GCCGGAGAATCTGGCTCGGTACTTTTGCAACGGCGGAGGAAGCTGCCATCGTCTACGACA 595 Query 495 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTaccaacttcaccgtaccaccagaac 554 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 596 ACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACAACCAGAAC 655 Query 555 ccgaaccagaacccgaaccggaaccagaacaagaaccgGAGAGCAACATGTCGGTTTCGA 614 | ||||| | || || | ||| ||||||||||||||||||||||||||||||||||| Sbjct 656 CAGAACCGGTAC---AA--G-AACAAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGA 709 Query 615 TATCAGAATCAATGGACGACTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 674 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 710 TATCAGAATCAATGGACGATTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACC 769 Query 675 AAACATATGTCTCGGAGGAGCCAATCGATAATCTTATCAAACCGGTTAAACAAGAGTTTC 734 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 770 AAACATATGTCTCGGAGGAACCAATCGATAGTCTTATCAAACCGGTTAAACAAGAGTTTC 829 Query 735 TTGAACCAGAACAAGAACCAATAAGCTGGCATCTTGGAGAAGGTAATAAC-AATA-T--T 790 |||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | | Sbjct 830 TTGAACCAGAACAAGAGCCAATAAGCTGGCATCTTGGAGAAGGTAATA-CTAATACTAAT 888 Query 791 GATGATTCATTTCCATTGGACATTCCATTTCTCGACAACTATTTCAATGAATCACTACCC 850 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 889 GATGATTCATTTCCATTGGACATTACATTTCTCGACAACTATTTCAATGAATCATTACCA 948 Query 851 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAA--A-CAGAGAATGATTTGTTC 907 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| Sbjct 949 GACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAACCAACAGAGAATGATTTCTTC 1008 Query 908 AACGACCTTATGTTGTTTGATAACAACAACACAGAAGACA-ACGACTCTTCCGATATCAA 966 |||||||||||||| || |||| |||| || ||||| | || |||| ||||| ||||| Sbjct 1009 AACGACCTTATGTTATTCGATAGCAACG-CA--GAAGA-ATACTACTCCTCCGAGATCAA 1064 Query 967 AGAGATTGGTTCAAT-GTTCAACGATCTTGATGATTCTTTGATATCCGATCTTTTACTTG 1025 ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1065 AGAGATTGGTTCA-TCGTTCAACGATCTTGATGATTCTTTGATATCCGATCTCTTACTTG 1123 Query 1026 TGTGATATTTTTGCCAT-AACAAAAC 1050 ||||||||||||||||| ||| |||| Sbjct 1124 TGTGATATTTTTGCCATTAACCAAAC 1149 > AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:16263813-16264818 FORWARD LENGTH=910 Length=910 Score = 60.2 bits (32), Expect = 4e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 389 CGACCATGGGGAAAATGGGCGGCGGAGATTCG 420 |||||||||||||||||||||||||||||||| Sbjct 375 CGACCATGGGGAAAATGGGCGGCGGAGATTCG 406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51490000675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5