BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945245
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27940.1 | Symbols: ATMTM1, MTM1 | manganese tracking factor... 2052 0.0
> AT4G27940.1 | Symbols: ATMTM1, MTM1 | manganese tracking factor
for mitochondrial SOD2 | chr4:13904474-13907245 FORWARD LENGTH=1722
Length=1722
Score = 2052 bits (1111), Expect = 0.0
Identities = 1231/1287 (96%), Gaps = 15/1287 (1%)
Strand=Plus/Plus
Query 11 aaaaaaGTTAAATGGTTGAAGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAATGT 70
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 261 AAAAAAGTTAAATGGTTGAGGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAACGT 320
Query 71 CGT-CGTCGTCGTCTCCGGCGGCAATAGAAAGCCGTGATTTTTCGATCATTGATTCGAGT 129
| | ||||||||||||||| || |||||||||| ||||||||||||| | | | |
Sbjct 321 C-TCCGTCGTCGTCTCCGGTGGTAATAGAAAGCAGTGATTTTTCGAT-A---A--C---T 370
Query 130 GATGGTGGAATAAGAGATGTGAGAGGATTTGGTATAGCTTCTCGGCCTCAGTTGGAGAAG 189
|| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 371 GA---TGGAATGAGAGATGTGAGCGGATTTGGTATAGCTTCTCGACCTCAGTTGGACAAG 427
Query 190 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 487
Query 250 GTTTTGTCTGCTGTTACTTTAAATCCTCTTGACGTTGTTAAGACTCGATTGCAAGCTCAA 309
|||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 488 GTTTTGTCCGCCGTTACTCTAAATCCTCTTGACGTTGTCAAGACTCGATTGCAAGCTCAA 547
Query 310 GCCGCCGGAATGTCTTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GCCGCCGGAATGTCGTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 607
Query 370 GGACCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTTCACGCGCTGGTGTT 429
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 608 GGCCCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTGCACGCGCTGGTGTT 667
Query 430 CAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACTTTTGATGTC 489
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 668 GAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACATTTGATGTC 727
Query 490 TTCACCAAGATTATACGACAGGAGGGTCTAGCACGCCTTTGGAGAGGGACTAATGCTGGT 549
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 728 TTCACCAAGATCATACGACAGGAGGGTCTGGGACGCCTTTGGAGAGGGACTAATGCTGGT 787
Query 550 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTTCGCAAC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 788 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTCCGCAAC 847
Query 610 CGATTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 669
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CGGTTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 907
Query 670 GCAGGGTCCTTAGCGCGGTCCTTAGCTTGTACAGTGTGCTATCCTATAGATCTTGCAAGA 729
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 908 GCAGGGTCTTTAGCGCGGTCCTTAGCTTGTACAGTCTGCTATCCTATTGATCTTGCAAGA 967
Query 730 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCTGGTGTGAAGCCTCCGGGAGTTTTTAAA 789
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 968 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCCGGTGTGAAGCCTCCGGGAGTTTTTAAA 1027
Query 790 ACTCTAGTTGGTGTATTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGTTTGCAC 849
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1028 ACTCTAGTTGGTGTTTTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGCTTGCAC 1087
Query 850 AACTATCGTGTTCTCTGGAGAGGTTTGGGTGCACAGCTTGCCCGTGATGTTCCATTTTCA 909
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1088 AACTATCGTGGTCTCTGGAGAGGCTTGGGTGCACAGCTTGCCCGTGATGTTCCATTCTCA 1147
Query 910 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTTCTTGGAGTTGCGGGCAAT 969
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1148 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTCCTTGGAGTTGCGGGCAAT 1207
Query 970 GATACAAATCTTCTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGTTTTATAGCTGGTAGT 1029
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1208 GATACAAATCTTGTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGATTTATAGCTGGAAGT 1267
Query 1030 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1327
Query 1090 GACCCTGGTAGGGCATTGATAATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1149
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GACCCTGGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1387
Query 1150 GGAGGGATGAGAGGCCTGTTCATGGGAATGGGTCCACGAGTGGCGCGTGCAGGACCGTCG 1209
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1388 GGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACGTGCAGGACCATCG 1447
Query 1210 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1507
Query 1270 TCATGACCA-GCAAAGTCACTAATCTC 1295
|||||||| |||||||||||||||||
Sbjct 1508 TCATGACCCTGCAAAGTCACTAATCTC 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5