BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945248
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27900.1 | Symbols: | CCT motif family protein | chr4:13890... 1254 0.0
AT5G53420.1 | Symbols: | CCT motif family protein | chr5:21673... 254 1e-66
> AT4G27900.1 | Symbols: | CCT motif family protein | chr4:13890644-13892995
FORWARD LENGTH=1218
Length=1218
Score = 1254 bits (679), Expect = 0.0
Identities = 766/807 (95%), Gaps = 9/807 (1%)
Strand=Plus/Plus
Query 3 AGAGCAAAAGAATAAGAAATGTATGCACAAACTGGCTTAGCTTTCCGATTCATGCAGAG- 61
||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 197 AGAGCAAGAGATTAAGAAATGTATGCAGAAACTAGCTTAGCTTTCCGATTCATGCAGAGT 256
Query 62 --TTCTTCTCCAGAGATTCACCAATTTGAAGACCTCTTTAAATCCTACAAGCTCTCTGAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TCTTCTTCTCCAGAGATTCACCAATTTGAAGACCTCTTTAAATCCTACAAGCTCTCTGAT 316
Query 120 GAAATGAACAATCTTGTTGAGGCATGTGAGTATGATTTTGGAGAAGAGAGTGACCTATTC 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 317 GAAATGAACAATCTTGTTGAGGCAAGTGAGTATGATTTTGGAGAAGAGAGTGACCTATTC 376
Query 180 AAAGCCCCTGAGCCGATCATTGAAGAACCAATGCTAGCTGTTGATCCTCTCTCTCAAGAG 239
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 377 AAAGCCCCTGAGCCGATTATTGAAGAACCAATGTTAGCTGTTGATCCCCTCTCTCAAGAG 436
Query 240 CTTGTTGAACTCGGTGATCTCGGGTCGTTGCAGAGTGACCAACAGCTTATAGACAATGCT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 437 CTTGTTGAACTCGGTGATCTCGGGTCGTTGCAGAGTGACCAACAGCTTATAGACAAGGCT 496
Query 300 TTCTACGAGTGTGAGCAGGACCTCCTGGTCAAATCAGCTATGGAGTCTCCGCTCTCCGAG 359
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 497 TTCTACGACTGTGAGCAGGACCTCCTGGTGAAATCAGCCATGGAGTCTCCGCTCTCCGAG 556
Query 360 GTACTAGACATCAAGAACATCTCTTTAGTTGCAAAAATGGACA-CTGATGTGAAGAGTA- 417
||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 557 GTACTAGACATCAAGAACATCTCTTTAGTGGCAAAAATGGACAAC-GATGTGAAGAGTAC 615
Query 418 GTAGTGTGGTCGTCTCTGATGTCCCAATCCCAAAGAGTGTGAGCTCGGGAAACCTGAGCT 477
| ||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 616 G-AGTGTAGTCGTCTCTGATGTCCCAATTCCGAAGAGTGTGAGCTCGGGAAACTTGAGCT 674
Query 478 CAATGGATATGGTAC-AGCACGAGGATGCGGTGATTCAGAGCTTCCCTGATTTCCCTCCA 536
||||||||||||| | ||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 675 CAATGGATATGGT-CGAGCACAAGGATGCGGTGATTCAGGGATTCCCTGATTTCCCTCCA 733
Query 537 GTGGATTATGGCATGAGAAGAGCCTTTAGTGAAAGCGATATACAGACACTGGGAACTACA 596
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 734 GTGGATTATGGGATGAGAAGAGCCTTCAGTGAAAGCGATATACAGACACTGGGGACTGGA 793
Query 597 AATGCGGGTCTTGTCCAGTCTCAGCTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 656
||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 794 AATACGGGTCTTGTTCAGTCTCAGTTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 853
Query 657 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAA 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 854 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAAGCGAAATTTCGGGCGTAAA 913
Query 717 ATCAAGTATGCTTGCAGGAAGGCACTTGCAGATAGTCAACCGAGGATCCGAGGAAGGTTT 776
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 914 ATCAAGTATGCTTGTAGGAAGGCACTTGCAGACAGTCAACCGAGGATCCGAGGAAGGTTT 973
Query 777 GCGAAAACAGAGGAGATGCAGAAATGA 803
|| ||||||||||||||||||||||||
Sbjct 974 GCAAAAACAGAGGAGATGCAGAAATGA 1000
> AT5G53420.1 | Symbols: | CCT motif family protein | chr5:21673525-21675733
FORWARD LENGTH=1217
Length=1217
Score = 254 bits (137), Expect = 1e-66
Identities = 286/354 (81%), Gaps = 26/354 (7%)
Strand=Plus/Plus
Query 449 AAAGAGTGTGAGCTCGGGAAACCTGAGCTCAATGGATATGGT-ACA-G--C-ACGAG-GA 502
||||||||| |||||||| || ||||||| |||||| |||| ||| | | || || ||
Sbjct 608 AAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGAT-TGGTCACATGCACAACAAGAGA 666
Query 503 -TGCGGTGATTCAGAGCTTCCCTGATTTCCCTCCAGTGGATTATGGCATGAGAAGAGCCT 561
|| ||||||||| || ||||||||| | ||| |||||| ||| |||||||||
Sbjct 667 CTGTAATGATTCAGAATTTTCCTGATTTCGAT--TTTGG-TTATGGAATGCGAAGAGCCT 723
Query 562 TTAGTGAAAGCGATATACAGACAC-TGGGAACTACAAATGCGGGTCTTGTCCAGTCT-CA 619
|||||||| |||| ||||||| || |||| || |||||||| || ||| ||
Sbjct 724 TTAGTGAAGGCGACATACAGAAACTTGGG----------GCAGGTCTTGTTCAATCTCCA 773
Query 620 GCTGGATCGAATAATCATAAGTTGCACCTCTGAGGACCGCCGTGAGAAGCTTTCTCGATA 679
|| ||| | || || | || ||||| || || || |||||||||||||||||||||||
Sbjct 774 -CTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832
Query 680 CAGGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAGGC 739
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892
Query 740 ACTTGCAGATAGTCAACCGAGGA-TCCGAGGAAGGTTTGCGAAAACAGAGGAGA 792
||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 893 TCTTGCAGATAGCCAACCGA-GAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5