BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945261
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27790.1 | Symbols: | Calcium-binding EF hand family protei... 1639 0.0
> AT4G27790.1 | Symbols: | Calcium-binding EF hand family protein
| chr4:13850046-13851533 FORWARD LENGTH=1103
Length=1103
Score = 1639 bits (887), Expect = 0.0
Identities = 1022/1086 (94%), Gaps = 14/1086 (1%)
Strand=Plus/Plus
Query 1 CCACCTTTGG-CT-CTCGGAAAATGGCCAAGGTGGTGGTTTACGCGATACTAGCTGCCAC 58
||||| |||| || | ||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1 CCACC-TTGGACTAC-CGGAAAATGGCCAAGGTGGTGGTTTACACGATACTAACCGCCAC 58
Query 59 CTTCATCGTCCTCGTCCTCTTCGCTCATAAGAAACAAAACCGGACTCAATCCATTGAGGG 118
| ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 CATCATCTTCCTCATCCTCCTCGCTCATAAGAAACAAAACCAGACTCAATCCATTGAGGG 118
Query 119 TCTCATAAGCCGCCGCATTGGACGCAGGCTTGAAATGCCCGTGTTTGACCCTCTGGTGAC 178
|||||||| ||||||||| ||||| |||||||||||||| |||||||||||| |||||||
Sbjct 119 TCTCATAACCCGCCGCATCGGACGGAGGCTTGAAATGCCGGTGTTTGACCCTTTGGTGAC 178
Query 179 CCGGATCGAGCGGTTGTCTCATGAGAAAGAAGCTGGTACGAAGACCGTGGAGGCTGC-AA 237
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CCGGATTGAGAGGTTGTCTCATGAGAAAGAAGCTGGTACGAAGACCGTGGAGGCTGCGAA 238
Query 238 AGGAGGAGGAAGATGATATGTTTGAGGGGTATTTTGCACAAGAGAGAAGGCTTAACACGA 297
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 A-GAGGAGAAAGATGATATGTTTGAGGAGTATTTTGCACAAGAGAGAAGGCTTAACACGA 297
Query 298 CAATGAGGATCAAGTTCTTGTTCCCTCTGCTTGACGCGGCACCAAGAGATGGCTTCGTGA 357
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct 298 CAATGAGGATCAAGTTCTTGTTTCCTCTGCTTGACGCGTCTCCAAGAGATGGCTTTGTGA 357
Query 358 GCTTGAAAGAGCTTCAGACATGGATGATGCAGCAGACAGAGGACAACATGGGTTACAGAA 417
||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 358 GCTTGAAAGAGCTTCAGACATGGATGATGCAACAGACAGAAGACAACATGGTTTACAGAA 417
Query 418 CCGCCAAAGAGCTTGAGCTACAAGATAAGGACAAGGACGGTGTCATAACCTTT-GAAGAG 476
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 418 CCGCCAAAGAGCTTGAGCTACAAGATAAGGACAAGGACGGTGTCATAAC-TTTCGAAGAG 476
Query 477 TACTTGCCTCAATTCTCTAAGCAAGATATTGAGAAAAACGAGAAGGGTCACGGTGAAGCC 536
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 477 TACTTGCCTCAATTCTCTAAACAAGACATTGAGAAAAACGAGAAGGGTCACGGTGAAGCC 536
Query 537 GGTTGGTGGATGGAGCAATTCAAGAATTCCGATTTTGATCATAATGGCTCCCTCGACATT 596
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 537 GGTTGGTGGATGGAGCAATTCAAGAATTCTGATTTTGATCATAATGGCTCTCTCGACATT 596
Query 597 GAAGAGTTCAACAATTTCTTGCACCCTGAAGATAGCAGAAACGGAGATACTCAAAGATGG 656
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 597 GAGGAGTTCAACAATTTCTTGCACCCTGAAGACAGCAGAAACGGAGATACACAAAGATGG 656
Query 657 GTTCTAACGGAGCGAATGACGGGCATGGACACGAACGGTGATGGGAAGCTAGAGTACAGA 716
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 GTTCTAAAGGAGCGAATGACGGGCATGGACACGAACGGTGATGGGAAGCTAGAGTACAAA 716
Query 717 GAGTTTGTACAGAACACATACGAAATGTATAAAGAATTCGCAAAGTTCGAGACAGAGGAG 776
||||||||| | || |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 717 GAGTTTGTAAAAAATGCATATGAAATGTATAAAGAATTCGCAAAGTTCGAGAAAGAGGAG 776
Query 777 GATGAGAATGTGCCAACAGCTCAGCTTCTGTTCGCGGAGCTGGACAG-GAACAAAGACAG 835
|||||||||||||||||| |||||||||||||||| ||| ||||||| || |||||||||
Sbjct 777 GATGAGAATGTGCCAACACCTCAGCTTCTGTTCGCAGAGATGGACAGAGA-CAAAGACAG 835
Query 836 ATTCCTCGTGGCCAATGAGCTTCGACCCATTTTGCATTATCTTCAACCTGGTGAGATGAG 895
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 ATTCCTCGTGGCCGATGAGCTTCGACCCATTTTGCAATATCTTCAACCTGGTGAGATGAG 895
Query 896 TTATGCCAAATACTATTCTACTTTCCTTTGCCACGAGGCGGATGAGGATAAAGATGGTAA 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTATGCCAAATTCTATTCTACTTTCCTTTGCCACGAGGCGGATGAGGATAAAGATGGTAA 955
Query 956 ACTATCACTTGAAGAGATGTTGCGCCACGAAGATGTGTTTTACAAGGCAGTTCATCACGA 1015
|||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 956 ACTATCTCTTGAAGAGATGTTGCACCACGAAGATGTCTTTTACAAGGCAGTTCATCACGA 1015
Query 1016 AGAACT-GGACGACGAAGACTATTTTGATCATGATGAACTCTAATTTTTG--TGTGTTTT 1072
||| || ||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1016 AGA-CTTGGACGACGAAGACTATTTTGATCATGATGAACTCTAACTTTTGAATTTGTTTT 1074
Query 1073 CCTTCA 1078
||||||
Sbjct 1075 CCTTCA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5