BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945268
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27720.1 | Symbols: | Major facilitator superfamily protein... 2420 0.0
> AT4G27720.1 | Symbols: | Major facilitator superfamily protein
| chr4:13831038-13833814 FORWARD LENGTH=1841
Length=1841
Score = 2420 bits (1310), Expect = 0.0
Identities = 1376/1409 (98%), Gaps = 0/1409 (0%)
Strand=Plus/Plus
Query 7 TGGATCGAACAACAATGGAGGTGTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 66
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 152 TGGATCGAACGACAATGGAGATTTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCG 211
Query 67 TCGCGGCTTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TCGCGGCGTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCA 271
Query 127 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 ATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGC 331
Query 187 AGGGTCCATATGTTTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AGGGTCCATATGTGTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGAC 391
Query 247 AGCTTTTCATTGCTGGTTTTGGCTCCTCTATGTTGTTTGGTACAATCGTTGGATCTCTAG 306
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 392 AGCTTTTCATTGCTGGTTTTGGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAG 451
Query 307 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTACATATTGAGCT 366
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 452 CCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCT 511
Query 367 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCA 571
Query 427 TTGCTACTTCTCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTGCTACTTCCCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGA 631
Query 487 GGGGCTTTGAGCAGCAATGGCTGTCTGTAACATTTTCAAAGGCGGTGTTTTTTGGCAATG 546
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 632 GGGGCTTTGAGCAGCAATGGCTGTCTGTGACATTTTCAAAGGCAGTGTTTTTTGGCAACG 691
Query 547 GTCTTGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTGGATACCTTCTCTCTTG 606
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 692 GTCTCGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTTGATACCTTCTCTCTTG 751
Query 607 GGCCTGTTGCGCCATTTGATGCTGCTGCGTGCTTTCTTGCTATTGGAATGGCTGTCATTC 666
||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 752 GGCCTGTTGCGCCATTTGACGCTGCTGCATGCTTTCTTACTATTGGAATGGCTGTCATTC 811
Query 667 TATCATCATGGACAGAAAACTATGGAGATCCTTCAGAAAACAAGGACTTGCTTACCCAGT 726
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 812 TATCATCATGGACAGAAAACTATGGAGATCCATCAGAAAACAAGGACTTGCTTACCCAGT 871
Query 727 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTGTTGGGTGCCATCC 786
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 872 TCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTATTGGGTGCTATCC 931
Query 787 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGCC 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 932 AGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGTC 991
Query 847 CGAACGAGGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTGGCTTCGATGC 906
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 992 CGAACGATGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTAGCTTCGATGC 1051
Query 907 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGCTCAACTCCCAAAGTAGAGAGCTACA 966
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1052 TAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGTTCAACTCCCAAAGTAGAGAGCTACA 1111
Query 967 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 TGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGT 1171
Query 1027 TCATAGCACCTTCCAAGGTGAAAGGTGGGGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1086
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1172 TCATAGCACCTTCCAAGGTGAAAGGTGGAGGAATCTCTTTCTCGGGTTGCTTTCAGCTCC 1231
Query 1087 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGATTGTTTTGGCCATCCATTATGAAGATGA 1146
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1232 TTGGGTTCTGTATATTCGAGGCGTGTGTAGGACTGTTTTGGCCATCCATAATGAAGATGA 1291
Query 1147 GATCCCAATACATCCCTGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GATCCCAATACATCCCAGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTC 1351
Query 1207 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGT 1411
Query 1267 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTGCAAAGGCGGCTCATGATGA 1326
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1412 TTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGA 1471
Query 1327 TTGTTGACAAGCCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1386
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 TTGTTGACAAACCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAG 1531
Query 1387 ATCCCCTTAACATATGATGAATAAACTAT 1415
||||||| |||||||||||||| ||||||
Sbjct 1532 ATCCCCTCAACATATGATGAATTAACTAT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5