BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945271
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27690.1 | Symbols: VPS26B | vacuolar protein sorting 26B | ... 1594 0.0
AT5G53530.1 | Symbols: VPS26A | vacuolar protein sorting 26A | ... 1086 0.0
> AT4G27690.1 | Symbols: VPS26B | vacuolar protein sorting 26B
| chr4:13823596-13826395 FORWARD LENGTH=1200
Length=1200
Score = 1594 bits (863), Expect = 0.0
Identities = 924/954 (97%), Gaps = 1/954 (0%)
Strand=Plus/Plus
Query 1 TTGAGATCTAGTCTTCTGATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCGTGCAAC 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 108 TTGAGATCTAGTCTTCTTATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCCTGCAAC 167
Query 61 ATTTCAATCACTTTTTCCGATGGCAAAAATCGTAAACAGATTCCCATGAAGAAAGAAAAT 120
|| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 168 ATCTCCATCACTTTTTCTGATGGCAAAAATCGTAAACAGGTTCCCATGAAGAAAGAAAAT 227
Query 121 GGTCAAACGGCTCTGGTGCCACTTTTCCATAGTCAAGATACTATTTCTGGGAAGGTTTGC 180
||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||||
Sbjct 228 GGTCAGACGGCTCTGGTGCCTCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGC 287
Query 181 ATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 ATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGT 347
Query 241 CAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGACTTCACTTCCTTGGTTCGTGAA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 348 CAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGAA 407
Query 301 CTGGATGTCCCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCAACTGTG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 408 CTGGATGTACCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCTACTGTG 467
Query 361 GAGATGCCATATGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTTCTCAAAGTA 420
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 468 GAGATGCCATACGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTA 527
Query 421 ACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTCCGGAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 528 ACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTACGGAAC 587
Query 481 TACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGC 647
Query 541 CTGCACATTGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGG 600
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 CTGCACATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGG 707
Query 601 AAAATCTATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGG 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AAAATATATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGG 767
Query 661 CGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACACTTGCGAAATTT 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 768 CGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTT 827
Query 721 GAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCAATACCTGTAAGACTGTTTCTGGCC 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 GAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCC 887
Query 781 CCATACGATCTTACACCAACACATCGCAACATTAACAACAAATTCAGCGTCAAGTATTAT 840
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 888 CCATATGATCTTACACCAACGCATCGCAACATCAACAACAAATTCAGCGTCAAGTATTAT 947
Query 841 CTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACG 1007
Query 901 TTGTACAGGTTGAAGGAAGACACATCATCTTGATGATAATAACAACTGTTAAGG 954
||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1008 TTGTATAGGTTGAAGGAAGACGCATCATCTTGATGATAATAACTACTGT-AAGG 1060
> AT5G53530.1 | Symbols: VPS26A | vacuolar protein sorting 26A
| chr5:21746035-21748595 REVERSE LENGTH=1317
Length=1317
Score = 1086 bits (588), Expect = 0.0
Identities = 814/923 (88%), Gaps = 16/923 (2%)
Strand=Plus/Plus
Query 12 TCTTCTGATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCGTGCAACATTTCAATCAC 71
|||||| || |||||||||||||||||||| |||||||| || || || |||||||||||
Sbjct 159 TCTTCTTATCATGAATTATCTTCTTGGAGCTTTCAAGCCAGCATGTAATATTTCAATCAC 218
Query 72 TTTTTCCGATGGCAAAAATCGTAAACAGATTCCCA-TGAAGAAAGAAAATGGTCAAACGG 130
||| | ||||| ||||| ||||||||| | |||| | |||||||| ||||| |||| |
Sbjct 219 ATTTACTGATGGGAAAAACCGTAAACAGGTACCCACT-AAGAAAGATAATGGACAAATAG 277
Query 131 CTCTG-GTGCCACTTTTCCATAGTCAAGATACTATTTCTGGGAAGGTTTGCATTGAACCA 189
| || | ||||||||||| |||||||| |||||| |||||||| || ||||||||||
Sbjct 278 TTATGAAT-CCACTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCA 336
Query 190 TATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAA 249
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TATCAAGGGAAAAAAGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAA 396
Query 250 ATGTACTTTGACAGAGGAAACTTCTATGACTTCACTTCCTTGGTTCGTGA-ACTGGATGT 308
||||||||||||||||||||||| |||||||||||||||||||| ||||| | || ||||
Sbjct 397 ATGTACTTTGACAGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTG-ATGT 455
Query 309 CCCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCAA-CTGTGGAGATGC 367
|||||||||||||| ||||| ||||||||||||||||||||| | | | || |||||||
Sbjct 456 ACCTGGAGAAATATATGAAAGAAAGACATACCCTTTTGAATTTTCGAGC-GTTGAGATGC 514
Query 368 CATATGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTTCTCAAAGTAACCGTCA 427
||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||
Sbjct 515 CATATGAGACATACAATGGCGTGAACGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCA 574
Query 428 CTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTT-GTGGTCCGGAACTACGCT 486
| ||||| || |||||||||||| ||||||||||||| ||| |||||||| ||||| | |
Sbjct 575 CACGTGGTTATGCTGGAAGCATCGTGGAATACCAGGA-CTTTGTGGTCCGTAACTATGTT 633
Query 487 CCACTTCCTG-ATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCA 545
|| |||||| | || ||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 634 CCGCTTCCTCCA-ATCAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGTCTGCA 692
Query 546 CATTGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAAT 605
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAAT 752
Query 606 CTATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGA 665
|| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 753 ATACTTTCTTCTGGTGAGAATCAAGATAAAGAATATGGATCTTGAGATAAGACGGCGAGA 812
Query 666 ATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACACTTGCGAAATTTGAGTT 725
|||||| || ||||| ||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct 813 ATCAACTGGAGCAGGAGCTAATACTCACGTCGAAACAGAAACACTAGCCAAATTTGAGTT 872
Query 726 GATGGATGGAACTCCAGTTAGAGGTGAATCAATACCTGTAAGACTGTTTCTGGCC-CCAT 784
|||||||| ||||||||||||| ||||| |||||||||||| |||| || | | ||||
Sbjct 873 AATGGATGGTGCTCCAGTTAGAGGCGAATCGATACCTGTAAGAGTGTT-CTTGACACCAT 931
Query 785 ACGATCTTACACCAACACATC-GCAACATTAACAACAAATTCAGCGTCAAGTATTATCTG 843
||||||| |||||||| ||| | ||||| ||||||||||||||||| |||||||||||
Sbjct 932 ACGATCTGACACCAACGCATAAG-AACATAAACAACAAATTCAGCGTAAAGTATTATCTA 990
Query 844 AATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTG 903
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 AATCTTGTGCTGGTGGATGAAGAGGATCGCCGTTACTTCAAGCAGCAAGAAATCACGTTG 1050
Query 904 TACAGGTTGAAGGAAGACACATC 926
|||||| | |||||||| |||||
Sbjct 1051 TACAGGCTCAAGGAAGAGACATC 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5