BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945280

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27654.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   327    2e-89
  AT4G27657.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   200    4e-51


> AT4G27654.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant 
structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr4:13811645-13812126 FORWARD LENGTH=482
Length=482

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 215/233 (92%), Gaps = 3/233 (1%)
 Strand=Plus/Plus

Query  4    TTCCAAAAAAGTTGATCATGATCTCCATCGTAATCATTACTGAGCTACTAGTGGAGTACA  63
            |||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct  81   TTCCGAAAAAGTCGATCATGATTTCCATCGTAATCATTACTGAGCTACTAGTAGAGTACA  140

Query  64   CGACGGCTCTGGCTAAACTCACCGCCGGGATTCTTCCGAGACGGCAAGGTGATGGGA-AC  122
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||
Sbjct  141  CGACGGCTCTGGCTAAACTTACCGCCGGGATTCTTCCGAGACGGCAAGGCGAT-GGAGAC  199

Query  123  GTCGTTCGGATTGGCAGTTTCTCTATATATTGTCCTCCTAGATCATCACCGATTCCGGAT  182
            |||||| | |||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  200  GTCGTTAGAATTGGTGGTTTCTCTTTATATTGTCCTCCTAGATCATCACCGATTCCGGAT  259

Query  183  TTTTCTTCTCATCTTGTCGATTTCTGACATGTGACGATTGTGGAtt-tttttt  234
            |||||||||||||| |||||||||||| ||  |||||||||||||| ||||||
Sbjct  260  TTTTCTTCTCATCTCGTCGATTTCTGATATAAGACGATTGTGGATTGTTTTTT  312


> AT4G27657.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant 
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G54145.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:13813044-13813516 FORWARD LENGTH=473
Length=473

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 165/193 (85%), Gaps = 2/193 (1%)
 Strand=Plus/Plus

Query  18   ATCATGATCTCCATCGTAATCATTACTGAGCTACTAGTGGAGTACACGACGGCTCTGGCT  77
            |||||||| ||  | |||||||| |||||| ||||  ||||||||||||||||||| |||
Sbjct  78   ATCATGATATCTGTTGTAATCATCACTGAGTTACTTTTGGAGTACACGACGGCTCTTGCT  137

Query  78   AAACTCACCGCCGGGATTCTTCCGAGACGGCAAGGTGATGGGAACGTCGTTCGGATTGGC  137
            ||||||||||||||| ||||||||||||||||||| ||  | || ||  | || ||||||
Sbjct  138  AAACTCACCGCCGGGGTTCTTCCGAGACGGCAAGGCGACAGAAATGTTATACGTATTGGC  197

Query  138  AGTTTCTCTATATATTGTCCTCCTAGATCATCACC-GATTCCGGATTTTTCTTCTCATCT  196
             |||||||| |   ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct  198  GGTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTG-TTCCAGATTTTTCTTCTCATCT  256

Query  197  TGTCGATTTCTGA  209
            |||||||||||||
Sbjct  257  TGTCGATTTCTGA  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5