BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945285
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1489 0.0
AT4G27610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 750 0.0
> AT4G27620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G27610.3);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:13788861-13790918 REVERSE LENGTH=1390
Length=1390
Score = 1489 bits (806), Expect = 0.0
Identities = 901/948 (95%), Gaps = 2/948 (0%)
Strand=Plus/Plus
Query 49 GCGGTGAAGGACCAAACTGGATTC-TAATTGCAGGGGGTGCCTTGTTGAGCACATTGTCC 107
|||||||||||||||| |||| || ||||||| |||||||| |||||||| |||||||||
Sbjct 267 GCGGTGAAGGACCAAATTGGA-TCTTAATTGCTGGGGGTGCTTTGTTGAGTACATTGTCC 325
Query 108 ATTCGCTTTGGCTACAAATTAAAGCAGTCTATTGACTCAAAACCTCCTCATTCCAATGCC 167
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 326 ATTCGTTTTGGCTACAAATTAAAGCAGTCTATTGACTCCAAACCTCCTCATTCCAATGCC 385
Query 168 ACTGCTGGATTAAAACCCAATGGAACATCTGACAGAGGAAGATCTCTGAGATGCTGCTTG 227
|||| |||||||||||| ||||||||| | ||||||||||||| | | | |||||||||
Sbjct 386 ACTGGTGGATTAAAACCTAATGGAACAACCGACAGAGGAAGATTTAAGGGCTGCTGCTTG 445
Query 228 CATTCTAATGTATCTCCCTGTGAACGGAATACTGATTGCTGCTTTCACTGCACTCCCGGA 287
|||||||||| ||| ||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 446 CATTCTAATGCATCACCCTGTGAAAGGAATAATGATTGTTGCTTTCACTGCACTCCCGGA 505
Query 288 ACTGAGAATGGGGAAGGAAATCATGCTACAAATGAGCAAATGGCAGTGTCCAGTACTTCT 347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 506 ACTGAGAATGGGGAAGGAAATCATGCTACAAATGAGCAAATGGCAGAGTCCAGTACTTCT 565
Query 348 CTGCCTATTGTAACAGTTCCTGCTTCATCATATAGCAAAGAGAATGCAGGCATGTGGGCA 407
|||||| |||| ||||||||||||||||||||||||||||||| ||||| | | |||| |
Sbjct 566 CTGCCTCTTGTGACAGTTCCTGCTTCATCATATAGCAAAGAGAGTGCAGTCGTATGGGGA 625
Query 408 TCTTCTCCTGATCACCTGGAAGTGCCGATGAAACCATACCATCACCATTCGACCTGCTCA 467
||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 626 TCTTCTCCTGACCACCTGGAAGTGCCGATGAAAGCATACCATCAACATTCGACCTGCTCA 685
Query 468 GATTCTCCTTGCGTATCTGAATCCGGTTCAGACATCTTCAGCAAGCGAGAAGTAATACAG 527
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 686 GATTCTCCTTGCGTATCTGAATCCGGCTCAGACATCTTCAGCAAGCGAGAAGTAATACAG 745
Query 528 AAACTGAGGCAACAGCTAAAGAGACGTGATGACATGGTAGTTGAAATGCAGGAACAGATT 587
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 746 AAACTGAGGCAACAGCTGAAGAGACGTGACGACATGATAGTTGAAATGCAGGAACAGATT 805
Query 588 CTAGAGCTGCAAAACTCTCTTAACGCCCAGATGGGACACTCTAGCCATGTCCAAACACAG 647
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 806 CTAGAGCTGCAAAACTCGCTAAACGCCCAGATGGGACACTCTAGCCATATCCAAACACAG 865
Query 648 CTAGACGCAACAAACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGGCTGAGAAAG 707
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 866 CTAGACGCAACAAACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGACTGAGAAAG 925
Query 708 GCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGGTTGGAGTGGCGATGTGAAC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGGTTGGAGTGGCGATGTGAAC 985
Query 768 AGCGAAAACAACTACGAGTCACCAGAAAATGGAATAAGGGATGGAGAAAGAATAGAGATG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 AGCGAAAACAACTACGAGTCACCAGAAAATGGAATAAGGGATGGAGAAAGAATAGAGATG 1045
Query 828 TTGAGAAAAGAAGTGGGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TTGAGAAAAGAAGTGGGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGG 1105
Query 888 AGCTATAAGGAGCAGAAAACGGAGCTTTTGCAGAAAGTCAAAGAGTTGCAGCAGAGACTG 947
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1106 AGCTATAAGGAGCAGAAAACAGAGCTTTTGCAGAAGGTAAAAGAGTTGCAGCAGAGACTG 1165
Query 948 GATTCACAGCTCCCAAACATTTTGTAGGCGAAGAAGGTTAGGCATTGT 995
|| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1166 GACTCGCAGCTCCCAAACATTTTGTAGGTGAAGAAGGTTAGGCATTGT 1213
> AT4G27610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27620.2);
Has 1304 Blast hits to 1173 proteins in 200 species: Archae
- 14; Bacteria - 115; Metazoa - 628; Fungi - 104; Plants -
95; Viruses - 8; Other Eukaryotes - 340 (source: NCBI BLink).
| chr4:13785432-13788350 REVERSE LENGTH=1608
Length=1608
Score = 750 bits (406), Expect = 0.0
Identities = 807/991 (81%), Gaps = 66/991 (7%)
Strand=Plus/Plus
Query 51 GGTGAAGGACCAAACTGGATTCTAATTGCAGGGGGTGCCTTGTTGAGCACATTGTCCATT 110
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 442 GGTGAAGGGCCAAACTGGATACTAATTGCAGGGGGTGCATTGTTGAGCACATTGTCCATT 501
Query 111 CGCTTTGGCTACAAATTAAAGCAGTCTATTGACTCAAAACCTCCTCATTCCAATGCCACT 170
|||||||| ||||| |||||||||| |||| || ||| ||||| || |||| | ||
Sbjct 502 CGCTTTGGATACAAGCTAAAGCAGTCGCTTGATTCGAAA---CCTCAATCAAATGGCTCT 558
Query 171 GCTGGATTAAAACCCAATGGAACATCTGACAGAGG--AAGATCT-CTGAGATGCTGCTTG 227
|||||||||||||| ||||||||||||| ||||| || |||| | || || |||||
Sbjct 559 GCTGGATTAAAACCTAATGGAACATCTG--AGAGGCAAAAATCTAC-AAGCTGTTGCTTA 615
Query 228 CATTCTAATGTATCTCCCTGTGA-ACGGAATACTGA---TTGCTGCTTTCACTGCACTCC 283
|| |||| |||| ||||| | || |||| ||| ||| ||||| | || || |||
Sbjct 616 CACTCTACCACATCTTCCTGT-ACACAAAATAATGATTTTTGTTGCTTCCGCTCCATTCC 674
Query 284 CGGAACTGAGAATGGGGAAGGAAATCATGCT-ACAAATGAGCAAATGGCAGTGT-C-CA- 339
|||||||||| || ||||||||| | | | |||| |||||||| | | | | | ||
Sbjct 675 AGGAACTGAGAGTGTGGAAGGAAAAGA-GGTGACAAGCGAGCAAAT-G-A-TATCCGCAT 730
Query 340 --G-TACTTCTCTGCCTATTGTAACAGTTCCTGCTTCATCATATAGCAAAGAGAATGCAG 396
| ||||| |||||| |||| ||||||||||| || ||| ||||||||||||| ||
Sbjct 731 CTGACACTTCACTGCCTCTTGTGACAGTTCCTGC-TC--CATCGAGCAAAGAGAATGGAG 787
Query 397 GCATGTGGGCATCTTCTCCTGATCACCTGGAAGTGCCGATGAA-ACCATACCATCACCAT 455
|||||||||| |||||||||||| ||||||| | || || ||||||| ||||| ||
Sbjct 788 TCATGTGGGCAACTTCTCCTGATCGCCTGGAACTTCC-CCCAAGACCATACAATCACAAT 846
Query 456 TCGACCTGCTCAGATTCTCCTTGCGTATCTGAATCCGGTTCAGACATCTTCAGCAAGCGA 515
|| | |||||||||||||||||||||||||||| || | |||||||| |||||||| |||
Sbjct 847 TCAAACTGCTCAGATTCTCCTTGCGTATCTGAAACCAGCTCAGACATTTTCAGCAAACGA 906
Query 516 GAAGTAATACAGAAACTGAGGCAACAGCTAAAGAGACGTGATGACATGGTAGTTGAAATG 575
||||||||||||||||| ||||| ||||| |||||||| ||||||||| || ||||||
Sbjct 907 GAAGTAATACAGAAACTAAGGCAGCAGCTGAAGAGACGGGATGACATGATACAGGAAATG 966
Query 576 CAGGAACAGATTCTAGAGCTGCAAAACTC-TCTTAACGCCCAGATGGGACACTCTAGCCA 634
|| |||||||||||||||||||||||||| | | ||||| |||| || |||||| |||||
Sbjct 967 CAAGAACAGATTCTAGAGCTGCAAAACTCGTAT-AACGCACAGACGGCACACTCAAGCCA 1025
Query 635 TGTCCAAACACAGCTAGACGCAACA-AACAGGGACCTGTTTGAATCAGAAAGAGAAGTCC 693
| |||| ||||||||||| || | ||||| || ||||||||||||||||||||||| |
Sbjct 1026 TCTCCAGGCACAGCTAGACACA-CTGAACAGAGATCTGTTTGAATCAGAAAGAGAAGTTC 1084
Query 694 AGAGGCTGAGAAAGGCAATCGCTGATCACTGCGTGGGA-----C----ACA-CA--GGTA 741
| || |||||||||||||| ||||||||| |||||||| | ||| || || |
Sbjct 1085 AAAGACTGAGAAAGGCAATTGCTGATCACAGCGTGGGATGTGGCGCGGACAGCAATGGCA 1144
Query 742 -G-CAA-T--GGTTGGA----G---TGGCGA-TGT--GAACAGCGAAAACAACTACGAGT 786
| || | ||||||| | ||||| | | | ||||||||| ||| || ||||
Sbjct 1145 AGACATCTCCGGTTGGACCTTGGAATGGCGGGTTTATGGACAGCGAAAGCAATTATGAGT 1204
Query 787 CACCAGAAAATG-GAATAAGGGATGGAGAAAGAATAGAGATGTTGAGAAAAGAAGTGGGT 845
||| |||||| | | ||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1205 CACAAGAAAA-GAGCCTAAGGGATGGAGAAAGAGTAGAGATGTTGAGAAAGGAAGTGAGT 1263
Query 846 GAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGGAGCTATAAGGAGCAGAAA 905
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1264 GAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGAAGCTATAAGGAGCAGAAG 1323
Query 906 ACGGAGCTTTTGCAGAAAGTCAAAGAGTTGCAGCAGAGACTGGATTCACAGCTCCCAAAC 965
| ||||||| |||||| || ||||||||||||||||||||||| |||||||||| ||||
Sbjct 1324 ATTGAGCTTTCGCAGAAGGTAAAAGAGTTGCAGCAGAGACTGGACTCACAGCTCCAAAAC 1383
Query 966 ATT-TTGTAGGCGAAGAAGGTTAGGCATTGT 995
|| ||||||| | | |||||||||||||||
Sbjct 1384 -TTATTGTAGGTGGA-AAGGTTAGGCATTGT 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5