BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945288
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27600.1 | Symbols: NARA5 | pfkB-like carbohydrate kinase fa... 2174 0.0
> AT4G27600.1 | Symbols: NARA5 | pfkB-like carbohydrate kinase
family protein | chr4:13782515-13785112 REVERSE LENGTH=1761
Length=1761
Score = 2174 bits (1177), Expect = 0.0
Identities = 1377/1469 (94%), Gaps = 32/1469 (2%)
Strand=Plus/Plus
Query 1 AGAGCAAAAAC--TCTAATTCCATGGccttctcgctcctctctccaattccttcctctgc 58
||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 87 AGAGC-AAAACTATCTAATTCCATGGCGTTCTCCCTCCTCTCTCCAATTCCTACCTCTGC 145
Query 59 ctctctttctttcactctctccgcc---a-----t-taataatg---cctcctcctctct 106
|||||||| |||||||||||||||| | | |||||||| |||||||||||||
Sbjct 146 CTCTCTTTTTTTCACTCTCTCCGCCATTACCGCTTCTAATAATGCTTCCTCCTCCTCTCT 205
Query 107 ctcccctctctactctTTATATCATCCCAAAGGAACCTTACGAACCAGAACCGCGACCTC 166
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 206 CTCCCGTCTTTACTCTTTATATCACCCCAAAGGAACCTTACGAACCAGAACCGCGACCTC 265
Query 167 GATTTTCGGAGCCTCTGGGAACTTGAGGATTGATTCCATGACGGATAATTATAATAGGCA 226
| |||||||||| ||||||||||||||||||| ||||||| ||| | ||||||||
Sbjct 266 GTTTTTCGGAGCTTCTGGGAACTTGAGGATTGTTTCCATGGCGG------AGAATAGGCA 319
Query 227 ATTGGTTTGTAGGATTGGTGGTTGCGGCGGCGGTGGTGAATTGGATGATATGGATGAATG 286
||||||||||||||||||| | |||| | ||||| |||||||||||||||||||||| |
Sbjct 320 ATTGGTTTGTAGGATTGGT-G--GCGGAGCCGGTGCTGAATTGGATGATATGGATGAAGG 376
Query 287 TGAAATCCAGAGAATTGGAAATCACGACGAAGATGACGACGAATTCATACAAGTCCATGC 346
|||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 377 TGAAATCCAGAGGATTGGAAATGAAGACGAAGACGACGATGAATTCATACAAGTCCATGC 436
Query 347 -----A-TCCTCTGCTGCTTCTCCTGAGAGATGGGATGTTTTGGGTCTTGGCCAAGCCAT 400
| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 437 TAATAATTCCTCTGCTGCTTCGCCTGAGAGATGGGATGTTTTGGGTCTCGGCCAAGCCAT 496
Query 401 GGTAGATTTCTCTGGAGTTGTGGATGATGAGTTTCTAGAGAAACTGGGATTAGAAAAGGG 460
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 497 GGTAGATTTCTCTGGAGTTGTGGATGATGAGTTTCTAAAGAAACTTGGTTTAGAAAAGGG 556
Query 461 AACAAGGAAACTGATTAATCACGAGGAGAGGGGTAAATTATTACAAGCAATGGATGGTTG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AACAAGGAAACTGATTAATCACGAGGAGAGGGGTAAATTATTACAAGCAATGGATGGTTG 616
Query 521 TAGCTATAAGGCGGCAGCTGGAGGATCATTGTCAAACACTTTAGTTGCTCTTGCAAGATT 580
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 617 TAGCTATAAGGCGGCAGCTGGAGGCTCATTGTCCAACACTTTAGTTGCTCTCGCAAGATT 676
Query 581 AGGTTCTCAATCCATCGGTGACCGGCCTTTGAATGTGGCAATGGCTGGCAGTATTGGAGG 640
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGGTTCTCAATCCATCTGTGACCGGCCTTTGAATGTGGCAATGGCTGGCAGTATTGGAGG 736
Query 641 TGACCCTCTCGGTAGCTTTTACGGGACTAAACTACGTCGAGCAAATGTAAATTTTCTTTC 700
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 737 TGACCCTCTCGGTAGCTTTTACGGGACTAAACTACGACGAGCAAATGTAAATTTTCTTTC 796
Query 701 TGCTCCAATCAAGGATGGAACAACGGGAACAGTGATAGTTCTCACAACTCCTGATGCCCA 760
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 797 TGCTCCAATCAAGGACGGAACAACAGGAACAGTGATAGTTCTCACAACTCCTGATGCACA 856
Query 761 ACGAACTATGCTTGCATATCAGGGAACATCTTCTGTCGTTAATTATGATTCTTGTTTGGC 820
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 857 ACGTACTATGCTTGCATATCAGGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGC 916
Query 821 TAGCTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGA 880
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TAGTTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGA 976
Query 881 TACTATAAGGACCATAACAAAAGCCTGCGAAGAAGCCCACAGAAATGGGGCACTTGTTGC 940
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 977 TACTATAAGAACCATAACAAAAGCCTGCGAAGAAGCCCACAGAAACGGGGCACTTGTTGC 1036
Query 941 TGTGACAGCATCAGATGTATCCTGCATAGAGAGGCATTATGATGATTTCTGGGACATTGT 1000
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGTGACAGCATCAGATGTGTCCTGCATAGAGAGGCATTATGATGATTTCTGGGACATTGT 1096
Query 1001 GGGGAACTATGCAGATATTGTATTTGCAAACAGCGATGAAGCAAGAGCGTTTTGTCACTT 1060
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1097 GGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCAAGAGCGTTTTGTCACTT 1156
Query 1061 TTCCGCTGAGGAAAGCCCAATTTCAGCGACAAGGTACATGAGCCACTTTGTTCCATTTGT 1120
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1157 TTCCGCAGAGGAAAGTCCAATTTCAGCGACAAGATACATGAGCCACTTTGTTCCGTTTGT 1216
Query 1121 ATCGGTGACTGATGGAATCAACGGGTCATACATTGGAGTAAAAGGAGAGGCCATATACAT 1180
|| || || |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1217 TTCTGTTACCGATGGAATCAACGGGTCATATATTGGAGTAAAAGGAGAGGCCATCTACAT 1276
Query 1181 TCCTCCGTCCCCATGCGTGCCAGTTGATACATGTGGTGCTGGAGATGCATATGCTTCAGG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TCCTCCGTCCCCATGCGTGCCAGTTGATACATGTGGTGCTGGAGATGCATATGCTTCAGG 1336
Query 1241 GATCTTATACGGTATCTTGAGAGGTGTCTCTGACTTGAAAGGAATGGGAGATATGGCTGC 1300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GATCTTATACGGTATCTTGAGGGGTGTCTCTGACTTGAAAGGAATGGGAGATATGGCTGC 1396
Query 1301 AACGATTGCAGCAACAGTGGTGGGTCAACAAGGAACCAGGCTTAGGGTTCAGGACGCTGT 1360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1397 AACGATTGCAGCAACTGTGGTGGGTCAACAAGGAACCAGGCTTAGGGTTCAGGACGCGGT 1456
Query 1361 TGAGCTTGCTCGATCACATGCTTTCCGTCTCAACGGATCTGGTGTTCGAACAGATGTTGG 1420
|||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1457 TGAGCTGGCTCGATCACATGCCTTCCGTCTCAATGGTTCTGGTGTTCGAACAGATGTTGG 1516
Query 1421 GTCTTGATGAAATCTCT--AGCTTGTGAT 1447
|||||||||||| |||| ||||||||||
Sbjct 1517 GTCTTGATGAAACCTCTTTAGCTTGTGAT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5