BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945291

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27590.2 | Symbols:  | Heavy metal transport/detoxification ...   610    4e-174


> AT4G27590.2 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr4:13771185-13772594 FORWARD LENGTH=1038
Length=1038

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 436/483 (90%), Gaps = 23/483 (5%)
 Strand=Plus/Plus

Query  1    AAATACATAGTTAACCTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG  60
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  20   AAATACATAGTTAAAGTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG  79

Query  61   AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGCTGCGAGAAGAAAGTCA  120
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  80   AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGTTGCGAGAAGAAAGTCA  139

Query  121  AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA  199

Query  181  AGGTGACGGTGTGGGGGATTTGTAACAAGCTCGATGTGTTAGCGATGGTGAAAAAGAAGA  240
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  200  AGGTGACGGTGTGGGGGATTTGTAACAAACTCGATGTGTTAGCGATGGTGAAAAAGAAGC  259

Query  241  GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAACATAATAATCCAGAGAGCGTTGATTGCA  300
            |||||||||||||||||||||||||||||||| |  | |||  | |     |  |    |
Sbjct  260  GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAAGAGGAGAAT--A-A-----T--A----A  305

Query  301  TCGTCATAAAGGACGTTGATGATTGCATCGTCATGAAGGAAGATACTAGGA--AAA-CTT  357
            ||  || | ||  ||||||||||||||| ||| | || ||||| ||||  |  ||| |||
Sbjct  306  TC--CAGAGAG--CGTTGATGATTGCATTGTCGTAAAAGAAGACACTATTATTAAAACTT  361

Query  358  C-TGTTGATACCGATAAATCATCAGCGTTTTATACGTATTCTACGTCGCCTCCGAGATTT  416
            | | ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| 
Sbjct  362  CAT-TTGATACCGATAAATCATCGGCGTTTTATACGTATTCTACAACGCCTCCGAGATTC  420

Query  417  AGTATAAGACCTCCTTTGTCACTCATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG  476
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  421  AGTATAAGACCTCCTATGTCACTTATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG  480

Query  477  AAG  479
            |||
Sbjct  481  AAG  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5