BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945292
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27585.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 2152 0.0
AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 972 0.0
> AT4G27585.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr4:13766763-13769961 REVERSE
LENGTH=1586
Length=1586
Score = 2152 bits (1165), Expect = 0.0
Identities = 1239/1276 (97%), Gaps = 0/1276 (0%)
Strand=Plus/Plus
Query 1 TTTCTGATTCTCCCACTAAGATGAACCACCTCGTTCGTAAAAGCTCCGTCGGTTACTCCG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TTTCTGATTCTCCCACGAAGATGAACCACCTCGTTCGTAAAAGCTCCGTCGGTTACTCCG 169
Query 61 CCTTGAGGTCCGTTACGTACCTCCGTCAGTCTGCCGTTACCTCTCCATCTCCGATTTTCT 120
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 170 CCTTGAGGTCCGTTTCGTACCTCCGTCAATCTGCCGTTACCTCTCCACCTCCGATTTTCT 229
Query 121 CCGCCGCCGCATCAACTGTTCGCCAGTTCACCTCCGCCGGCTATCCTTCCAACAGTTTTC 180
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 230 CCGCCGCCGCTTCAACCGTTCGCCAGTTCACTTCCGCCGGCTATCCTTCCAACAGTTTTC 289
Query 181 AGTTAACGCCGCCGGTGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTTTGTGA 240
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AATTGACGCCGCCGACGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTTTGTGA 349
Query 241 TTGAGCGATTCGGTAAATACGCTAAGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGT 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 350 TTGAGCGATTCGGTAAATACGCTACGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGT 409
Query 301 TCGTGGATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCAATCCCGATTCCGAATC 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 410 TCGTGGATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCTATCCCGATTCCGAATC 469
Query 361 AGACTGCGATTACCAAAGACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGA 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGACTGCGATTACTAAAGACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGA 529
Query 421 TTGTGGATCCTATGTTAGCTTCTTACGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGC 480
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 530 TTGTGGATCCTAAGTTAGCTTCTTATGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGC 589
Query 481 TGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACGCTTGATAAGACCTTTGAGG 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 590 TGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGG 649
Query 541 AACGAGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCTAGAGACTGGG 600
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 650 AACGAGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCAAAAGACTGGG 709
Query 601 GTCTTCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGAGAGCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 GTCTTCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGCGAGCTG 769
Query 661 CTATGGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTATGGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAG 829
Query 721 GAGAAAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAGAAAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCAT 889
Query 781 CTGAAGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CTGAAGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAG 949
Query 841 CTAGAGCACAAGCAACTGCGAGAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTG 900
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTAGAGCACAAGCAACTGCGAAAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTG 1009
Query 901 GGGGAGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGGGAGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACA 1069
Query 961 TTGCCAAAGAGGGCACGACAATGTTGCTTCCAAGTACTGCTTCAAATCCTGCTAGCATGA 1020
||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1070 TTGCCAAGGAGGGTACGATAATGTTGCTTCCAAGTGGTGCTTCAAATCCTGCTAGCATGA 1129
Query 1021 TTGCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCCAAGCAGAGATCACC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1130 TTGCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCCAAGCAAAGATCACC 1189
Query 1081 AAGAAACACAAGCACTTGATGAAACAGACTTGGAAGAGTTGGAAGACCTGGATGAGAAAC 1140
|||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 1190 AAGAAACACAAGCACTTGATGAAACAGATTTGGAAGAGTTGGAAGACATGGGTGAGAAAC 1249
Query 1141 ATATATCAGAAGGCTCTAATAACCGATCAGGCTCAACATCCTTTGACACCGAGAAACCAG 1200
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1250 ATATATCAGAAGGCTCTAATAACCGATCAGGCTCAATATCATTTGACACAGAGAAACCAG 1309
Query 1201 GTCACACCGGTGAACCACGATTTTCTCTTCAGGACCGCAACAAGGATCCGCGGTAGGCAG 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1310 GTCACACCGGTGAACCACGATTTTCTCTTCAGAACCGCAACAAGGATCCGCAGTAGGCAG 1369
Query 1261 CCGAACTTGGGATGAG 1276
|||||| ||||||||
Sbjct 1370 CCGAACCGGGGATGAG 1385
> AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:21953787-21956564 REVERSE
LENGTH=1518
Length=1518
Score = 972 bits (526), Expect = 0.0
Identities = 761/874 (87%), Gaps = 17/874 (2%)
Strand=Plus/Plus
Query 201 TGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTT-TGTGATTGAGCGATTCGGTAAA-T 258
||||||||||| || || ||||||||||| || || |||||||||||| || |||||| |
Sbjct 374 TGGGGAATCCGAATCGTGCCGGAGAGGAAAGC-TTGTGTGATTGAGCGGTTTGGTAAATT 432
Query 259 ACGCTAAGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGTTCGTGGATCGTATTGCTT 318
| | | ||| |||||| |||||||||| ||||| ||||||| ||||||||||| ||||
Sbjct 433 CCAC-ACGACTTTGCCGGCGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTT 491
Query 319 ATGTTCATTCTCTCAAGGAAGAAGCAATCCCGATTCCG-AATCAGACTGCGATTACCAAA 377
||||||||||||| ||||||||||| || || ||| | |||||||||||||||| ||||
Sbjct 492 ATGTTCATTCTCTAAAGGAAGAAGCGATTCCTATT-GGTAATCAGACTGCGATTA-CAAA 549
Query 378 -GACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTATGTT 436
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 550 GGATAACGTTAGCATCCACATCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTT 609
Query 437 AGCTTCTTACGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGCTGGCTCAGACCACAAT 496
|||||||| |||||||||| ||| |||||||||||| | ||| |||||||||| |||||
Sbjct 610 GGCTTCTTATGGCGTTGAGAATCCGATCTATGCTGTTATGCAGTTGGCTCAGACTACAAT 669
Query 497 GCGTAGTGAGCTTGGTAAGATCACGCTTGATAAGACCTTTGAGGAACGAGACACTCTCAA 556
|||||||||||| ||||| || || ||||| ||||| ||||||||||| |||||||||||
Sbjct 670 GCGTAGTGAGCTCGGTAAAATTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAA 729
Query 557 CGAGAAGATAGTGGAAGCCATCAATGTTGCTGCTAGAGACTGGGGTCTTCAGTGCCTTCG 616
|||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 730 TGAGAAGATTGTGGAAGCCATCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGCCTTCG 789
Query 617 TTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGAGAGCTGCTATGGAAATGCAAGC 676
||||||||| |||||||| ||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 790 TTATGAGATCAGGGATATCATGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGC 849
Query 677 TGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGAAAGGCAATCCCA 736
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 850 TGAAGCTGAACGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGAACGTCAAGCCCA 909
Query 737 TATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCATCTGAAGCAGCAAAGAT 796
|||||| | ||||||||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct 910 TATCAATAGAGCTGATGGTAAGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAATGAT 969
Query 797 GGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAGCTAGAGCACAAGCAAC 856
|||||| || ||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 970 GGACCAAGTCAATCGTGCACAAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAAC 1029
Query 857 TGCGAGAGGC-CTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAG-AGGCG 914
|| | ||| |||| | || ||||||| |||||||||||| |||| |||| || ||||
Sbjct 1030 AGCCA-AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAG-AGGAGGCT 1087
Query 915 GCGAGTTTGAGAGTTGCAGAGCAATACATTACA-GCCTTCGGTAACATTGCCAAAGAGGG 973
||||||||||||||||| |||||||||||| || || || || || ||||| || |||||
Sbjct 1088 GCGAGTTTGAGAGTTGCGGAGCAATACATT-CAAGCTTTTGGCAAAATTGCTAAGGAGGG 1146
Query 974 CACGACAATGTTGCTTCCAAGTACTG-CTTCAAATCCTGCTAGCATGATTGCTCAAGCTT 1032
|| |||||| ||||||| |||| || | ||| ||||||||||||||| ||||||||||
Sbjct 1147 TACAACAATGCTGCTTCCGAGTAATGTCGACAA-TCCTGCTAGCATGATCGCTCAAGCTT 1205
Query 1033 TAACAATGTACAAAAGCCTTGTCATCAATGGTCC 1066
|| |||||||||| | |||||| ||| |||||
Sbjct 1206 TAGGAATGTACAAAGGG-TTGTCAACAAAGGTCC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5