BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945309
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27435.1 | Symbols: | Protein of unknown function (DUF1218)... 922 0.0
> AT4G27435.1 | Symbols: | Protein of unknown function (DUF1218)
| chr4:13723794-13725137 FORWARD LENGTH=896
Length=896
Score = 922 bits (499), Expect = 0.0
Identities = 541/562 (96%), Gaps = 0/562 (0%)
Strand=Plus/Plus
Query 1 AGAGAGAGTAAGGTGAATCCATGGCGTCCAAGATTGTCTCAGCCATAGTCTTTGTGTTTA 60
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 90 AGAGAGACTAAGGTGAATCCATGGCGTCCAAGATTGTCTCAGCCATAGTATTTGTGTTTA 149
Query 61 ACCTCATTGCCTTTGGCTTAGCCGTTGCTGCTGAACAAAGACGAAGCACTGCAAGGGTTG 120
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 150 ACCTCATTGCCTTTGGTTTAGCCGTTGCTGCTGAACAAAGAAGAAGCACTGCAAGGGTTG 209
Query 121 TGCAGGACACTGAGGTGCAATACAACTACTGTGTGTATGATTCAGACAGAGCCACAGGGT 180
|||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct 210 TGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGACTCGGACAGAGCTACAGGGT 269
Query 181 ATGGAGTTGGAGCCTTTTTGTTCTCAGTGGTTAGTCAATTCGTTATCATGCTCGTTAGCC 240
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 270 ATGGAGTTGGAGCCTTTTTGTTCTCAGTGGCTAGTCAAATCCTTATCATGCTCGTTAGCC 329
Query 241 GATGCTTCTGCTGTGGAAAGCCTCTCAAGCCTGGCGGTTCACGCGCTCTTGCCCTCGTTC 300
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 330 GTTGCTTCTGTTGTGGAAAGCCTCTCAAGCCTGGCGGTTCACGCGCTCTTGCCCTCATTC 389
Query 301 TCTTCATTGTTAGCTGGATGTTCTTCTTGATAGCGGAGATATGTCTATTAGCTGGATCGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCTTCATTGTTAGCTGGATGTTCTTCTTGATAGCGGAGATATGTCTATTAGCTGGATCGG 449
Query 361 TAGAGAATGCATACCACACAAAGTACAGGACAATGTTCATGGACAATCCTCCTGATTGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TAGAGAATGCATACCACACAAAGTACAGGACAATGTTCATGGACAATCCTCCTGATTGTC 509
Query 421 AAACTCTACGTAAAGGCGTCTTCGCCGCCGGCGCCTCATTCGTCTTCTTCAACGCCATTG 480
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 510 AAACTCTACGTAAAGGCGTCTTTGCAGCAGGCGCCTCATTCGTCTTCTTCAACGCCATTG 569
Query 481 TCTCTCAGTTCTACTATTTCTTCTATTCCTCTGCTGCCGAGGTCTCCCTTTCACCTTACT 540
||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||
Sbjct 570 TCTCTCAGTTCTACTATTTCTTCTATTTCTCTGCTGCTGAGGCCTCTCTTTCACCTTACT 629
Query 541 AGAGGTTCTTAACCAACAAATA 562
||||||||||||||||||||||
Sbjct 630 AGAGGTTCTTAACCAACAAATA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5