BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945327
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27310.1 | Symbols: | B-box type zinc finger family protein... 523 7e-148
> AT4G27310.1 | Symbols: | B-box type zinc finger family protein
| chr4:13675638-13676910 FORWARD LENGTH=1181
Length=1181
Score = 523 bits (283), Expect = 7e-148
Identities = 343/370 (93%), Gaps = 11/370 (3%)
Strand=Plus/Plus
Query 1 AAGAGTTCGA-TTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAGCGGTGTTGCAAGA 59
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 195 AAGAGTTTGATTTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGA 254
Query 60 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGACTGCGACGGTAAAGTTCACGGC 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGC 314
Query 120 GCTAATTTCTTGGTCGCTAAGCACACGCGGTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 179
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 315 GCTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 374
Query 180 ACGCCGTGGAAAGC--CTCGGGACTTCGCCTTGGCCCAACTTTCTCCGTCTGCGATTCAT 237
|||||||||||||| || ||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 375 ACGCCGTGGAAAGCTACT-GGG-CTTCGTCTTGGCCCAACTTTCTCCGTCTGCGAGTCAT 432
Query 238 GCGTCGCTCTTAAAAACGCCGGCGGTGG---TGGAAACCGTGTTTCATCGGAGAGTCGAG 294
|||||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| |
Sbjct 433 GCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTG 492
Query 295 GTCAGGAGGAGGTTAACAGTTTCGAGTCCGAAGAAGATCGGATCAGAGAAGATGATGGCG 354
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||
Sbjct 493 GTCAGGAGGAGGTTAATAGTTTCGAGTCCGAAGAAGATCGGATTAGAGAAGATCA---CG 549
Query 355 GTGACGGTGA 364
||||||||||
Sbjct 550 GTGACGGTGA 559
Score = 370 bits (200), Expect = 9e-102
Identities = 239/257 (93%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 363 GAAGCTGAGAATCAAGTTGTTCCGTGGTCTGCGGCGGCGCAACCACCTCCGGTGATGAGT 422
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 657 GAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAGT 716
Query 423 TCTTCATCTTCTGACTGTGGAAGCGGAGGTTCGGTGACGAAGAGGACGAGGACTAGGGAG 482
||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| |||
Sbjct 717 TCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAG 776
Query 483 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGCTCTTCTTCAGCTCAAGAGTCA 542
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 777 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAG--C-TCTTCAGCTCAAGGGTCA 833
Query 543 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTGGTTTAACT-A-A 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 834 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTTTAACTCACA 893
Query 601 CTCTATCGTATCGTCAG 617
||||| |||||||||||
Sbjct 894 CTCTACCGTATCGTCAG 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5