BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945343
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27150.1 | Symbols: SESA2, AT2S2 | seed storage albumin 2 | ... 689 0.0
AT4G27160.1 | Symbols: AT2S3, SESA3 | seed storage albumin 3 | ... 641 0.0
AT4G27140.1 | Symbols: SESA1, AT2S1 | seed storage albumin 1 | ... 483 1e-135
AT4G27170.1 | Symbols: SESA4, AT2S4 | seed storage albumin 4 | ... 435 3e-121
> AT4G27150.1 | Symbols: SESA2, AT2S2 | seed storage albumin 2
| chr4:13609341-13610075 FORWARD LENGTH=735
Length=735
Score = 689 bits (373), Expect = 0.0
Identities = 487/540 (90%), Gaps = 15/540 (3%)
Strand=Plus/Plus
Query 22 AAATGGCGAACAAGCTTTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACCA 81
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 54 AAATGGCAAACAAGCTCTTCCTCGTCTGCGCAACTTTCGCCCTCTGCTTCCTCCTCACCA 113
Query 82 ACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATGG 141
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 114 ACGCTTCCATCTACCGCACTGTTGTCGAGTTCGACGAAGATGACGCCAGCAACCCCATGG 173
Query 142 GCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAATCACAGCACCTAAGAGCTTGCCAGA 201
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 174 GCCCAAGACAGAAATGTCAGAAGGAGTTTCAGCAATCACAGCACCTAAGAGCTTGCCAGA 233
Query 202 GATTCATGCAG-AAGCAAACAAGGCAA-G--GTCGTGGTGG--------T-GAAGATGAG 248
||| |||| | | ||||| |||||| | || ||||||| | || ||||||
Sbjct 234 AATTGATGC-GCATGCAAATGAGGCAAGGCCGTGGTGGTGGTCCCTCCCTCGACGATGAG 292
Query 249 TTCGATTTCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGACACCAGCTACTC 308
|||||||| |||||||| || ||||||||||| ||||||||||||||||||||| | |||
Sbjct 293 TTCGATTTGGAAGACGACATCGAGAACCCACAAGGCCCCCAGCAGGGACACCAGATCCTC 352
Query 309 CAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAA 368
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 353 CAGCAGTGCTGCAGCGAGCTTCGCCAGGAAGAGCCAGTTTGTGTTTGCCCCACCTTGAGA 412
Query 369 CAGGCGGCTAGAGCCGTTAGACTCCAGGGACAGCACGGACCATTCCAATCCAGGAAAATT 428
|| || || || |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 413 CAAGCTGCCAGGGCCGTTAGCCTCCAGGGACAACACGGACCATTCCAATCCAGGAAAATT 472
Query 429 TACCAGACAGCTAAGTACTTGCCTAAGGTTTGCAGGATCCAGCAAGTTGGTGAATGCCCC 488
||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 473 TACAAGACAGCTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGTTGGTGAATGCCCC 532
Query 489 TTCCAGACCACCATCCCCTTCTTCCCTCCTTACTACTAGATTCCAAACAAAA-CCATCGA 547
||||||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||
Sbjct 533 TTCCAGACCACCATCCCTTTCTTCCCTCCTTACTAATAGATTCCAAACAAAAACCCTCGA 592
> AT4G27160.1 | Symbols: AT2S3, SESA3 | seed storage albumin 3
| chr4:13611796-13612563 FORWARD LENGTH=768
Length=768
Score = 641 bits (347), Expect = 0.0
Identities = 477/538 (89%), Gaps = 16/538 (3%)
Strand=Plus/Plus
Query 3 AAGAACACAT--ACAAATA-C-CAA-ATGGCGAACAAGCTTTTCCTCGTCTGCGCAACTC 57
||||| |||| ||||||| | || ||||| |||||||| |||||||||||||||||||
Sbjct 15 AAGAAAACATACACAAATAGCAAAACATGGCTAACAAGCTCTTCCTCGTCTGCGCAACTC 74
Query 58 TCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACG 117
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 75 TCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTTGTCGAATTCGAAG 134
Query 118 AAGATGACGCCACCAACCCCATGGGCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAAT 177
|||||||||||| ||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 135 AAGATGACGCCAGCAACCCCGTAGGTCCAAGACAGAGATGCCAGAAGGAGTTTCAGCAAT 194
Query 178 CACAGCACCTAAGAGCTTGCCAGAGATTCATGCAG-AAGCAAACAAGGCAAGGTCGTGGT 236
|||| |||||||||||||||||||||| ||| || ||||||| |||||||| ||||||
Sbjct 195 CACAACACCTAAGAGCTTGCCAGAGATGGATG-AGCAAGCAAATGAGGCAAGGACGTGGT 253
Query 237 GGTGAAGATGAGTTCGATTTCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGA 296
|||| | | ||| |||| || || | || | |||||||||||||||||
Sbjct 254 GGTG--G-T-CCTTC--CCTCGACGATGA-GT-TCGATTTC-GAGGGCCCCCAGCAGGGA 304
Query 297 CACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGC 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGC 364
Query 357 CCCACCTTGAAACAGGCGGCTAGAGCCGTTAGACTCCAGGGACAGCACGGACCATTCCAA 416
|||||||||||||| || || || || ||||| |||||||||||||||||||||||||||
Sbjct 365 CCCACCTTGAAACAAGCTGCCAGGGCAGTTAGCCTCCAGGGACAGCACGGACCATTCCAA 424
Query 417 TCCAGGAAAATTTACCAGACAGCTAAGTACTTGCCTAAGGTTTGCAGGATCCAGCAAGTT 476
|||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct 425 TCCAGGAAAATTTACCAGTCAGCTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGTT 484
Query 477 GGTGAATGCCCCTTCCAGACCACCATCCCCTTCTTCCCTCCTTACTACTAGATTCCAA 534
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 485 GGTGAATGTCCCTTCCAGACCACCATCCCTTTCTTCCCTCCTTACTACTAGAGTCCAA 542
> AT4G27140.1 | Symbols: SESA1, AT2S1 | seed storage albumin 1
| chr4:13607329-13608031 FORWARD LENGTH=703
Length=703
Score = 483 bits (261), Expect = 1e-135
Identities = 445/529 (84%), Gaps = 31/529 (6%)
Strand=Plus/Plus
Query 22 AAATGGCGAACAAGCTT-TTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACC 80
||||||| |||||| || ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 33 AAATGGCAAACAAG-TTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTCCTCACC 91
Query 81 AACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATG 140
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 92 AACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCACTAACCCCATA 151
Query 141 GGCCC-AAGA-CA-GAGATGCCAG-AAGGAGTTCCAGCAATCACAGCACCTAAGAGCTTG 196
||||| || | | || ||||| | |||||||| ||| || ||| ||||||||||||||
Sbjct 152 GGCCCAAAAATGAGGAAATGCC-GCAAGGAGTTTCAGAAAGAACAACACCTAAGAGCTTG 210
Query 197 CCAG-AGATTCATGCAGAAGCAAACAAGGCAAGGTCGTGGTGGTGAAGATGAGTTCGATT 255
|||| | ||| |||| ||||| |||||||||| | || | |||||||| ||||
Sbjct 211 CCAGCA-ATTGATGCTCCAGCAAGCAAGGCAAGG-C--CGT--AG-CGATGAGTTTGATT 263
Query 256 TCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGACACCAGCTACTCCAGCAGT 315
|||||||||| ||||||||||||||||| | ||||||| ||| |||||| |||||||||
Sbjct 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323
Query 316 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACAGGCGG 375
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |
Sbjct 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383
Query 376 CTAGAG-CCGTTAGACTCCAGGGACAGCACGGACCATTCCAA-TCCAGGAAAATTTACCA 433
| | || ||||||||||||||||||||||| |||| | ||| || ||||||||||||||
Sbjct 384 CCA-AGGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTC-AGGAAAATTTACCA 441
Query 434 GACAGCTAAGTACTTGCCTAAGGTTTGC-AGGATCCAGCAAGTTGGTGAATGCCCCTTCC 492
|||||| ||| ||||||| || |||||| | |||| |||||||| || || ||||||
Sbjct 442 GACAGCCAAGCACTTGCCCAACGTTTGCGAC-ATCCCGCAAGTTGATGTTTGTCCCTTC- 499
Query 493 AGACCACCATCCCCTTC-TTCCCTCCTTACTACTAGAT-TCCAAACAAA 539
| || | |||| ||| |||||| ||| |||||| || || |||||||
Sbjct 500 A-AC-A---TCCC-TTCATTCCCTTCTTTCTACTAAATCTC-AAACAAA 541
> AT4G27170.1 | Symbols: SESA4, AT2S4 | seed storage albumin 4
| chr4:13613596-13614283 FORWARD LENGTH=688
Length=688
Score = 435 bits (235), Expect = 3e-121
Identities = 437/529 (83%), Gaps = 35/529 (7%)
Strand=Plus/Plus
Query 21 CAAATGGCGAACAAGCTTTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACC 80
||||||||||||||||| ||||||||||||||| |||||||||| || ||| ||||||||
Sbjct 39 CAAATGGCGAACAAGCTCTTCCTCGTCTGCGCAGCTCTCGCCCTGTGTTTCATCCTCACC 98
Query 81 AACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATG 140
||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 99 AACGCTTCCGTCTATCGCACCGTTGTCGAGTTCGACGAAGATGACGCCAGTAACCCCATA 158
Query 141 GGCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAATCA-CAGCACCTAAGAGCTTGCCA 199
||||||| ||||| ||| ||||||||||| |||||| | ||||||||||||||||||||
Sbjct 159 GGCCCAATACAGAAATGTCAGAAGGAGTTTCAGCAA-GACCAGCACCTAAGAGCTTGCCA 217
Query 200 GAGATTCATGCAG-AAGCAAACAAGGCAAGGTCGTGGTGGTGAAGATGAGTTCGAT-TTC 257
||||| |||| | ||||||| ||||||| |||||||||| | | ||| | |
Sbjct 218 GAGATGGATGC-GCAAGCAAATGTGGCAAGGACGTGGTGGTG--G-T-CCTTCCCTCGAC 272
Query 258 GA--AG-ACGATATGG-AGAACCCACA--GGGCCCCCAGCAGGGAC-ACCAGCTACTCCA 310
|| || |||||||| || | | ||| | | ||| |||| ||| | |||||||||||
Sbjct 273 GATGAGTTCGATATGGAAG-A-CGACATCGAGAACCC-GCAGAGACGA-CAGCTACTCCA 328
Query 311 GCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACA 370
| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 329 GAAGTGCTGCAGCGAGCTTCGCCAAGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAGACA 388
Query 371 GGCGGCTAGAG-CCGTTAGACTCCAGGGACAGCA-CGG-A-CCATTCCAA-TCCAGGAAA 425
|| || | || |||||||| ||||||||||||| | | ||| ||| || ||||||
Sbjct 389 AGCTGCCA-AGGCCGTTAGATTCCAGGGACAGCAACACCAACCAGAGCAAGTC-AGGAAA 446
Query 426 ATTTACCAGACAGCTAAGTACTTGCCTAAGGTTTGCAGGATCCAGCAAGTTGGTGAATGC 485
||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 447 ATTTACCAGGCAGCTAAGTACTTGCCTAACATTTGCAAAATCCAGCAAGTTGGTGTTTGC 506
Query 486 CCCTTCCAGACCACCATCCCCTTCT-TCCCTCCTTACTACTAGATTCCA 533
|||||||||| |||| ||| ||||| |||||||||| ||||||
Sbjct 507 CCCTTCCAGA------TCCC-TTCAATCCCTTCTTACTACTAAATTCCA 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5