BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945347 Length=2047 Score E Sequences producing significant alignments: (Bits) Value AT4G27110.1 | Symbols: COBL11 | COBRA-like protein 11 precursor... 3243 0.0 > AT4G27110.1 | Symbols: COBL11 | COBRA-like protein 11 precursor | chr4:13599126-13601552 REVERSE LENGTH=2148 Length=2148 Score = 3243 bits (1756), Expect = 0.0 Identities = 1953/2050 (95%), Gaps = 6/2050 (0%) Strand=Plus/Plus Query 1 ACTTGGGAAACACGATAGAGATGAAGAAGATACC-TTACGTCCATCTAAACCTCCTTCTC 59 ||||||||||||||||||||||||||||| | || |||||||||| |||||||||||||| Sbjct 12 ACTTGGGAAACACGATAGAGATGAAGAAGCT-CCGTTACGTCCATTTAAACCTCCTTCTC 70 Query 60 CTTCTATTACCTCTGATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 CTTCTATTACCTCTAATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 130 Query 120 GAACCAAAGAAGGATGATACTCCACCGCCAGGCCTTGCCCGTTGCAACGGAGTTTACATG 179 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 131 GAACCAAAGAAGGATGATACTCCACCGCCAGGTCTGGCCCGTTGCAACGGAGTTTACATG 190 Query 180 TCTTACAGTTCCGGCGGCCGCGAAAAGTTGTATCCTCGCACCACAAACGCGACGGCTCAA 239 |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 191 TCTTACAGTTCCGGTGGCCGAGAAAAGTTGTATCCTCGCACCACAAACGCGACTGCTCAA 250 Query 240 GCTTGGTCGTTTAAATCAACGGCCATGATCGTGAACACCGGTATCGAAGAGGTCAAAGGC 299 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 251 GCTTGGTCTTTTAAATCAACGGCCATGATCGTGAACACTGGTATCGAAGAGGTCAAAGGT 310 Query 300 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACCGGAGCTGTC 359 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 311 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACTGGAGCTGTC 370 Query 360 TCATCTGACGGTGACTTTCCTGTCGATGCAACCAACGGGACTACGTTTATAGGGTCTCCG 419 ||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| | Sbjct 371 TCATCTGACGGTGACTTCCCGGTCGATGCAACCAACGGTACTACGTTTATCGGGTCTCAG 430 Query 420 AACACGGATCTAAAGACCTCAATCCTGACAGCTGGCGATTACACTCAGATCTCAACCAAT 479 || ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 431 AATACGGACCTAAAGACCTCGATCCTGACAGCTGGCGATTACACTCAGATCTCGACCAAT 490 Query 480 ATCGAGATAACCGGAACGGTTTTCGGCGGGAAAGGTACGGCTACGCCAATGCCGAAAACC 539 ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| | Sbjct 491 ATCGAGATAACCGGAACGGTTTTTGGCGGGAAAGGTACAGCTACGCCGATGCCGAAATCG 550 Query 540 ATCAAGCTCACAAACGATGGATGGCAATGTCCTGCAGCTACTTCTAAAGGTGATACAATG 599 ||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||| Sbjct 551 ATCAAGCTCACAAACGATGGATGGCAATGCCCTGCTGCTACTTCTAAAGGCGGTACAATG 610 Query 600 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGTTGAAAACCAAGTTC 659 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 611 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGGTGAAAACCAAGTTC 670 Query 660 ATGCCTAGACAACACGGTGACCTGAATATAATCTACGACGTTCTTCAAGCCTATGCTAGC 719 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 671 ATGCCTAGACAACACGGTGACCTGAACATAATCTACGACGTTCTTCAAGCCTATGCAAGC 730 Query 720 AGCTACATGGCGCAGGTGACTATCGATAACACTAGCCCGCTGGGACGGTTGGACCATTGG 779 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 731 AGCTACATGGCGCAGGTGACTATAGATAACACTAGCCCGCTGGGACGGTTAGACCATTGG 790 Query 780 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCTACTCGATGCGTGGAGCCTACGCG 839 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 791 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCCACTCGATGCGTGGAGCCTACGCG 850 Query 840 GCCGAGAAAAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 899 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 GCCGAGAAGAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 910 Query 900 GATTTCTCCCAGGTTGCTAATTGCCAGAAGAAACCAATTATCAAAGATTTACCGGCTGAG 959 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 911 GATTTCTCTCAGGTTGCTAATTGCCAGAAGAAACCAATAATCAAAGATTTACCAGCTGAG 970 Query 960 AGAAAAGACGATAATGTCACCGGGAAATTGCCTTTCTGCTGCAAGAATGGTACTCTTTTG 1019 | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 971 CGTAAAGACGATAATGTCACCGGTAAATTGCCTTTCTGCTGCAAGAATGGCACTCTTTTG 1030 Query 1020 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTGTATAAGGTG 1079 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1031 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTTTACAAGGTA 1090 Query 1080 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAAATTGACGGTATA 1139 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1091 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAGATTGATGGTATA 1150 Query 1140 GTGAATCCG-CAGTACAAATGCGGACCACCTATACGGGTAGACGCGACCCCGTTCCCTGA 1198 ||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1151 GTGAATCCGAC-GTACAAATGCGGACCACCTATTCGGGTGGACGCGACCCCGTTCCCTGA 1209 Query 1199 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAACAT 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1210 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAATAT 1269 Query 1259 AACCAAGCCTAAACCAAAAGCTGCACGTTGCTGCGTCTCTTTCTCAGCCTTCTACAACGA 1318 |||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1270 AACCAAGCCTAAACCACAAGCTGCACGTTGCTGCGTCTCCTTCTCAGCCTTTTACAACGA 1329 Query 1319 CTCAGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATAGATACCGACACTTG 1378 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1330 CTCGGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATCGATACCGACACTTG 1389 Query 1379 CAACGCCAATGCCCGACCGCTTCTCCTCCCTCCAGACACGCTCTTGGTACCGTTTGATAA 1438 ||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||| Sbjct 1390 CAACGCCAATGCCCGACAGCTTCTCCTCCCTACTGACACACTCTTGGTACCGTTTGATAA 1449 Query 1439 CCGGACACTCAAGGCAAAAGTATGGGCAAAGCAGAAGCACATGGCTGT-TCCAAAGAAGC 1497 ||| || ||||||||||| ||||||||||||||||||||||||||| | ||||||||| | Sbjct 1450 CCGAACGCTCAAGGCAAAGGTATGGGCAAAGCAGAAGCACATGGCT-TATCCAAAGAAAC 1508 Query 1498 TTCCTTGTCCTGACAACTGTGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1557 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1509 TTCCTTGTCCTGACAACTGCGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1568 Query 1558 ATGGATGGTCCGCGCGAGTAACGTTGTTTAACTGGGGGAATAATGCAGTGGAGGATTGGT 1617 |||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1569 ATGGGTGGTCCGCAAGAGTAACTTTGTTTAACTGGGGAAATAATGCAGTGGAGGATTGGT 1628 Query 1618 TTGGGGCATTGGATTTAGGCAAAGCTGGTTTAGGGTATGAGAATATTTACTCCTTCAATG 1677 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1629 TTGGGGCTTTGGATTTAGGCAAAGCTGGTTTAGGATATGAGAATATTTACTCCTTTAATG 1688 Query 1678 GATCAAGAGTTCCACCAAAGAACCAGACCATTTTCTTCCAAGGACTTCCCGGTATGAACT 1737 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1689 GATCAAGAGTTCCACCTAAGAACCAGACCATTTTCTTCCAAGGACTTCCTGGTATGAACT 1748 Query 1738 ACTTGATTGGTATCACAAACGGAACGAATCCTGCAAGAGACCCGCAGATTCCCGGGAAAA 1797 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1749 ACTTGATTGGTATCACAAACGGAACGAATCCTGCGAGAGACCCGCAGATTCCCGGGAAAA 1808 Query 1798 TGCAGTCGGTTATCTCGTTTAAAAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1857 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1809 TGCAGTCGGTTATCTCGTTTAAGAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1868 Query 1858 ATGGATTTCCTAAAAGAGTTTTCTTCAATGGGGAAGAATGTGAGCTTCCCAATTATTTCC 1917 ||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct 1869 ATGGATTTCCTAAGAGAGTTTTCTTCAATGGAGAAGAATGTGAGCTTCCTAAGTATTTCC 1928 Query 1918 CTAAAAAGAGTTCCGGGAAGAGATTATCCAGTACCCGATTCTTGCCCTCGATTCTTCTCG 1977 |||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| Sbjct 1929 CTAAAAAGAGTTCCGGGATGAGATTATCCGGTATCCGATTCTTGCCTTCGATTCTTCTCG 1988 Query 1978 CGATCACAACAGTTCTTGCGATCACTGATCGCTTTTTAACCGGTGTGTAGATGCTTTAGT 2037 ||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1989 CGATCACAACATTTCATGCGATCACTGATCGCTTACTAACTGGTGTGTAGATGCTTTAGT 2048 Query 2038 TAATTATGTA 2047 |||||||||| Sbjct 2049 TAATTATGTA 2058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101455301445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5