BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945347
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27110.1 | Symbols: COBL11 | COBRA-like protein 11 precursor... 3243 0.0
> AT4G27110.1 | Symbols: COBL11 | COBRA-like protein 11 precursor
| chr4:13599126-13601552 REVERSE LENGTH=2148
Length=2148
Score = 3243 bits (1756), Expect = 0.0
Identities = 1953/2050 (95%), Gaps = 6/2050 (0%)
Strand=Plus/Plus
Query 1 ACTTGGGAAACACGATAGAGATGAAGAAGATACC-TTACGTCCATCTAAACCTCCTTCTC 59
||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||
Sbjct 12 ACTTGGGAAACACGATAGAGATGAAGAAGCT-CCGTTACGTCCATTTAAACCTCCTTCTC 70
Query 60 CTTCTATTACCTCTGATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTTCTATTACCTCTAATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 130
Query 120 GAACCAAAGAAGGATGATACTCCACCGCCAGGCCTTGCCCGTTGCAACGGAGTTTACATG 179
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 131 GAACCAAAGAAGGATGATACTCCACCGCCAGGTCTGGCCCGTTGCAACGGAGTTTACATG 190
Query 180 TCTTACAGTTCCGGCGGCCGCGAAAAGTTGTATCCTCGCACCACAAACGCGACGGCTCAA 239
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 191 TCTTACAGTTCCGGTGGCCGAGAAAAGTTGTATCCTCGCACCACAAACGCGACTGCTCAA 250
Query 240 GCTTGGTCGTTTAAATCAACGGCCATGATCGTGAACACCGGTATCGAAGAGGTCAAAGGC 299
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 251 GCTTGGTCTTTTAAATCAACGGCCATGATCGTGAACACTGGTATCGAAGAGGTCAAAGGT 310
Query 300 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACCGGAGCTGTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 311 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACTGGAGCTGTC 370
Query 360 TCATCTGACGGTGACTTTCCTGTCGATGCAACCAACGGGACTACGTTTATAGGGTCTCCG 419
||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| |
Sbjct 371 TCATCTGACGGTGACTTCCCGGTCGATGCAACCAACGGTACTACGTTTATCGGGTCTCAG 430
Query 420 AACACGGATCTAAAGACCTCAATCCTGACAGCTGGCGATTACACTCAGATCTCAACCAAT 479
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 431 AATACGGACCTAAAGACCTCGATCCTGACAGCTGGCGATTACACTCAGATCTCGACCAAT 490
Query 480 ATCGAGATAACCGGAACGGTTTTCGGCGGGAAAGGTACGGCTACGCCAATGCCGAAAACC 539
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
Sbjct 491 ATCGAGATAACCGGAACGGTTTTTGGCGGGAAAGGTACAGCTACGCCGATGCCGAAATCG 550
Query 540 ATCAAGCTCACAAACGATGGATGGCAATGTCCTGCAGCTACTTCTAAAGGTGATACAATG 599
||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||
Sbjct 551 ATCAAGCTCACAAACGATGGATGGCAATGCCCTGCTGCTACTTCTAAAGGCGGTACAATG 610
Query 600 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGTTGAAAACCAAGTTC 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 611 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGGTGAAAACCAAGTTC 670
Query 660 ATGCCTAGACAACACGGTGACCTGAATATAATCTACGACGTTCTTCAAGCCTATGCTAGC 719
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 671 ATGCCTAGACAACACGGTGACCTGAACATAATCTACGACGTTCTTCAAGCCTATGCAAGC 730
Query 720 AGCTACATGGCGCAGGTGACTATCGATAACACTAGCCCGCTGGGACGGTTGGACCATTGG 779
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 731 AGCTACATGGCGCAGGTGACTATAGATAACACTAGCCCGCTGGGACGGTTAGACCATTGG 790
Query 780 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCTACTCGATGCGTGGAGCCTACGCG 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 791 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCCACTCGATGCGTGGAGCCTACGCG 850
Query 840 GCCGAGAAAAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 899
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GCCGAGAAGAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 910
Query 900 GATTTCTCCCAGGTTGCTAATTGCCAGAAGAAACCAATTATCAAAGATTTACCGGCTGAG 959
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 911 GATTTCTCTCAGGTTGCTAATTGCCAGAAGAAACCAATAATCAAAGATTTACCAGCTGAG 970
Query 960 AGAAAAGACGATAATGTCACCGGGAAATTGCCTTTCTGCTGCAAGAATGGTACTCTTTTG 1019
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 971 CGTAAAGACGATAATGTCACCGGTAAATTGCCTTTCTGCTGCAAGAATGGCACTCTTTTG 1030
Query 1020 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTGTATAAGGTG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1031 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTTTACAAGGTA 1090
Query 1080 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAAATTGACGGTATA 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1091 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAGATTGATGGTATA 1150
Query 1140 GTGAATCCG-CAGTACAAATGCGGACCACCTATACGGGTAGACGCGACCCCGTTCCCTGA 1198
||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1151 GTGAATCCGAC-GTACAAATGCGGACCACCTATTCGGGTGGACGCGACCCCGTTCCCTGA 1209
Query 1199 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAACAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAATAT 1269
Query 1259 AACCAAGCCTAAACCAAAAGCTGCACGTTGCTGCGTCTCTTTCTCAGCCTTCTACAACGA 1318
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1270 AACCAAGCCTAAACCACAAGCTGCACGTTGCTGCGTCTCCTTCTCAGCCTTTTACAACGA 1329
Query 1319 CTCAGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATAGATACCGACACTTG 1378
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1330 CTCGGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATCGATACCGACACTTG 1389
Query 1379 CAACGCCAATGCCCGACCGCTTCTCCTCCCTCCAGACACGCTCTTGGTACCGTTTGATAA 1438
||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1390 CAACGCCAATGCCCGACAGCTTCTCCTCCCTACTGACACACTCTTGGTACCGTTTGATAA 1449
Query 1439 CCGGACACTCAAGGCAAAAGTATGGGCAAAGCAGAAGCACATGGCTGT-TCCAAAGAAGC 1497
||| || ||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1450 CCGAACGCTCAAGGCAAAGGTATGGGCAAAGCAGAAGCACATGGCT-TATCCAAAGAAAC 1508
Query 1498 TTCCTTGTCCTGACAACTGTGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1557
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TTCCTTGTCCTGACAACTGCGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1568
Query 1558 ATGGATGGTCCGCGCGAGTAACGTTGTTTAACTGGGGGAATAATGCAGTGGAGGATTGGT 1617
|||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1569 ATGGGTGGTCCGCAAGAGTAACTTTGTTTAACTGGGGAAATAATGCAGTGGAGGATTGGT 1628
Query 1618 TTGGGGCATTGGATTTAGGCAAAGCTGGTTTAGGGTATGAGAATATTTACTCCTTCAATG 1677
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1629 TTGGGGCTTTGGATTTAGGCAAAGCTGGTTTAGGATATGAGAATATTTACTCCTTTAATG 1688
Query 1678 GATCAAGAGTTCCACCAAAGAACCAGACCATTTTCTTCCAAGGACTTCCCGGTATGAACT 1737
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1689 GATCAAGAGTTCCACCTAAGAACCAGACCATTTTCTTCCAAGGACTTCCTGGTATGAACT 1748
Query 1738 ACTTGATTGGTATCACAAACGGAACGAATCCTGCAAGAGACCCGCAGATTCCCGGGAAAA 1797
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1749 ACTTGATTGGTATCACAAACGGAACGAATCCTGCGAGAGACCCGCAGATTCCCGGGAAAA 1808
Query 1798 TGCAGTCGGTTATCTCGTTTAAAAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1857
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1809 TGCAGTCGGTTATCTCGTTTAAGAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1868
Query 1858 ATGGATTTCCTAAAAGAGTTTTCTTCAATGGGGAAGAATGTGAGCTTCCCAATTATTTCC 1917
||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1869 ATGGATTTCCTAAGAGAGTTTTCTTCAATGGAGAAGAATGTGAGCTTCCTAAGTATTTCC 1928
Query 1918 CTAAAAAGAGTTCCGGGAAGAGATTATCCAGTACCCGATTCTTGCCCTCGATTCTTCTCG 1977
|||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1929 CTAAAAAGAGTTCCGGGATGAGATTATCCGGTATCCGATTCTTGCCTTCGATTCTTCTCG 1988
Query 1978 CGATCACAACAGTTCTTGCGATCACTGATCGCTTTTTAACCGGTGTGTAGATGCTTTAGT 2037
||||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1989 CGATCACAACATTTCATGCGATCACTGATCGCTTACTAACTGGTGTGTAGATGCTTTAGT 2048
Query 2038 TAATTATGTA 2047
||||||||||
Sbjct 2049 TAATTATGTA 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101455301445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5