BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945357
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein | chr... 1249 0.0
AT3G31960.1 | Symbols: | Pseudogene of AT3G31960 | chr3:129549... 780 0.0
AT3G30867.1 | Symbols: | pseudogene, putative SNF8 protein hom... 213 2e-54
AT3G30875.1 | Symbols: | pseudogene, putative multidrug resist... 152 5e-36
> AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4:13572889-13575538
REVERSE LENGTH=1480
Length=1480
Score = 1249 bits (676), Expect = 0.0
Identities = 753/791 (95%), Gaps = 1/791 (0%)
Strand=Plus/Plus
Query 1 AGATCTGAAAACAGTGAAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCG 60
||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 536 AGATCAGAAAACGGTGAAAGATGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCG 595
Query 61 CAGCTGCCAGGGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATA 120
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 596 CAGCTGCTAGGGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA 655
Query 121 TGATGAAAGAACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 180
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 656 TGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 715
Query 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 716 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGTGCTAACA 775
Query 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 776 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTGGGCTGAGCTCCTTGGTATTGGTG 835
Query 301 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACA 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 836 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATA 895
Query 361 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGAAGG 420
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 896 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAG 955
Query 421 ATCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGG 480
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 ACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGGTATTGG 1015
Query 481 GTAGCGGATTTGAGGTTATCACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGG 540
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1016 GTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAG 1075
Query 541 AGCTGAACAAAGACCATAACCAGATCTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGACTG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1076 AGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGATTG 1135
Query 601 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGGGTTATAGATGCTCTCGAAA 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGCGTTATAGATGCTCTCGAAA 1195
Query 661 CTTTGTTAGAAGAGGGCCTTGCAATGATCGACAACGGCCATAAAGACGGAAAGTGTCGAT 720
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1196 CTTTGTTAGAGGAGGGCCTTGCCATGATCGACAATGGCCATAAAGACGGAAAGTGTCGGT 1255
Query 721 ACTGGTTTCCCTGTGTTTCTTCTGTTTACTCATACATCGGATCTGATACTTAACCTGGTA 780
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1256 ACTGGTTTCCCTGTGTTTCTTCGGTTTACTCATCCATCGGATCTGATACTTAAA-TGGTA 1314
Query 781 CATGCTCTGTT 791
||||||| |||
Sbjct 1315 CATGCTCAGTT 1325
> AT3G31960.1 | Symbols: | Pseudogene of AT3G31960 | chr3:12954903-12955983
FORWARD LENGTH=565
Length=565
Score = 780 bits (422), Expect = 0.0
Identities = 514/558 (92%), Gaps = 7/558 (1%)
Strand=Plus/Plus
Query 21 ATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCGCAGCTGCCAGGGATCAGTAC 80
|||||| ||||||||||||||||||| || ||||||||||||||||| ||||||| |||
Sbjct 1 ATGCGATGACGACCAGGAATCGGAGGGTTACAAAAGGCCGCAGCTGCTGGGGATCAATAC 60
Query 81 CGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATATGATGAAAGAACAGCTCGCA 140
|| ||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||| |
Sbjct 61 CGATTACTAGGAGAAAATGTAGCCAAGTTACGGACTAATATGATGAAAGAATAGCTCTCC 120
Query 141 ACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGAATGACATTCGTAAGAAT 200
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 121 ACGTTCCTTTCCCAGCTTGAAGAGTTCGCTCGTAAACACGAGAATGACATTTGTAAGAAT 180
Query 201 CCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACATTGGTGTGGATCCTCTTGCT 260
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 CCTGCCTTCAGGGCTCAATTCCATGAAATGTGTGCTAACATTGGTGTGGATCCTCTTGCT 240
Query 261 TCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTGACTTCTACTATGAACTTGGA 320
|| ||||| |||||||||||||||||||| || ||||||||||||||||||| | ||
Sbjct 241 TCTAACAAGGGTTTCTGGGCTGAGCTCCTCGGTATTGGTGACTTCTACTATG-A----GA 295
Query 321 GTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACAATGGAGGTTTGATCAGCTTG 380
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 296 GTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATAATGGAGGTTTGATCAGCTTG 355
Query 381 CAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGA-AGGATCGTGAAGCTGTGACTGA 439
||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 356 CAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGACA-GACCGTGAAGCTGTGACTGA 414
Query 440 AGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGGGTAGCGGATTTGAGGTTAT 499
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 415 AGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGCTATTGGGTAGCAGATTTGAGGTTAT 474
Query 500 CACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGGAGCTGAACAAAGACCATAA 559
||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||
Sbjct 475 CACTATTGGCAAGAAAAAGTTTGTTCGTTCGGTACCCACTGAGCTGAACAAAGACCATAA 534
Query 560 CCAGATCTTGGAGTTGGC 577
||| ||||||||||||||
Sbjct 535 CCATATCTTGGAGTTGGC 552
> AT3G30867.1 | Symbols: | pseudogene, putative SNF8 protein homolog,
similar to SNF8 protein homolog GB:T04827 GI:7488343
from (Arabidopsis thaliana); blastp match of 70% identity and
4.2e-25 P-value to GP|5670007|gb|AAD46560.1||AF156102 ELL
complex EAP30 subunit {Homo sapiens} | chr3:12646169-12647549
FORWARD LENGTH=1381
Length=1381
Score = 213 bits (115), Expect = 2e-54
Identities = 131/139 (94%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240
|||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 1045 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAATTCCTTGAAATGTGTGCTAACA 1104
Query 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300
|||||||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||
Sbjct 1105 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTAGGCTGAGCTCCTCGGTATTGGTG 1164
Query 301 ACTTCTACTATGAACTTGG 319
|||||||||||||||||||
Sbjct 1165 ACTTCTACTATGAACTTGG 1183
Score = 163 bits (88), Expect = 2e-39
Identities = 104/112 (93%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 71 GGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATATGATGAAAGA 130
|||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 GGATCAATACCGGTTGCTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGA 838
Query 131 ACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG 182
| ||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 ATAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG 890
Score = 147 bits (79), Expect = 2e-34
Identities = 89/94 (95%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 318 GGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACAATGGAGGTTTGATCAGC 377
||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 1288 GGAGTTCAGATTATTGAAGTTTGCATGATTACAAGATCACATAATGGAGGTTTGATCAGC 1347
Query 378 TTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAA 411
|||||||||||||||||||||||||||| |||||
Sbjct 1348 TTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAA 1381
Score = 87.9 bits (47), Expect = 1e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 17 AAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCGCAGCTGCCAGGG 72
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 638 AAAGATGCGACGACGACCAGGAATCGGAGGATTACAAAAGGCCGCAACTGCTAGGG 693
> AT3G30875.1 | Symbols: | pseudogene, putative multidrug resistance
protein, similar to multidrug resistance protein 1 homolog
GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match
of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099
P-glycoprotein homologue {Hordeum vulgare subsp.
vulgare} | chr3:12647725-12654422 REVERSE LENGTH=6698
Length=6698
Score = 152 bits (82), Expect = 5e-36
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 579 CAGGGCCAAGGCTTTGTGACTGTGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGT 638
||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 6519 CAGAGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCGTGGACATCTGGT 6460
Query 639 CGGGTTATAGATGCTCTCGAAACTTTGTTAGAAG 672
|| |||||||||||||||||||||||||||||||
Sbjct 6459 CGCGTTATAGATGCTCTCGAAACTTTGTTAGAAG 6426
Score = 111 bits (60), Expect = 8e-24
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 505 TTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGGAGCTGAACAAAGACCATAACCAGA 564
||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||
Sbjct 6698 TTGGCAAGAAAAAGCTTGTTCGTACGGTTCCCACGGAGCTGAACAAAGACCATAACCAGA 6639
Query 565 TCTTGGAGTTGGCTC 579
| |||||||||||||
Sbjct 6638 TGTTGGAGTTGGCTC 6624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5