BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945357 Length=793 Score E Sequences producing significant alignments: (Bits) Value AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein | chr... 1249 0.0 AT3G31960.1 | Symbols: | Pseudogene of AT3G31960 | chr3:129549... 780 0.0 AT3G30867.1 | Symbols: | pseudogene, putative SNF8 protein hom... 213 2e-54 AT3G30875.1 | Symbols: | pseudogene, putative multidrug resist... 152 5e-36 > AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4:13572889-13575538 REVERSE LENGTH=1480 Length=1480 Score = 1249 bits (676), Expect = 0.0 Identities = 753/791 (95%), Gaps = 1/791 (0%) Strand=Plus/Plus Query 1 AGATCTGAAAACAGTGAAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCG 60 ||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 536 AGATCAGAAAACGGTGAAAGATGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCG 595 Query 61 CAGCTGCCAGGGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATA 120 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 596 CAGCTGCTAGGGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA 655 Query 121 TGATGAAAGAACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 180 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 656 TGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 715 Query 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240 |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 716 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGTGCTAACA 775 Query 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 776 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTGGGCTGAGCTCCTTGGTATTGGTG 835 Query 301 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACA 360 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 836 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATA 895 Query 361 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGAAGG 420 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 896 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAG 955 Query 421 ATCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGG 480 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 956 ACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGGTATTGG 1015 Query 481 GTAGCGGATTTGAGGTTATCACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGG 540 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 1016 GTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAG 1075 Query 541 AGCTGAACAAAGACCATAACCAGATCTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGACTG 600 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 1076 AGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGATTG 1135 Query 601 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGGGTTATAGATGCTCTCGAAA 660 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1136 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGCGTTATAGATGCTCTCGAAA 1195 Query 661 CTTTGTTAGAAGAGGGCCTTGCAATGATCGACAACGGCCATAAAGACGGAAAGTGTCGAT 720 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 1196 CTTTGTTAGAGGAGGGCCTTGCCATGATCGACAATGGCCATAAAGACGGAAAGTGTCGGT 1255 Query 721 ACTGGTTTCCCTGTGTTTCTTCTGTTTACTCATACATCGGATCTGATACTTAACCTGGTA 780 |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| Sbjct 1256 ACTGGTTTCCCTGTGTTTCTTCGGTTTACTCATCCATCGGATCTGATACTTAAA-TGGTA 1314 Query 781 CATGCTCTGTT 791 ||||||| ||| Sbjct 1315 CATGCTCAGTT 1325 > AT3G31960.1 | Symbols: | Pseudogene of AT3G31960 | chr3:12954903-12955983 FORWARD LENGTH=565 Length=565 Score = 780 bits (422), Expect = 0.0 Identities = 514/558 (92%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 21 ATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCGCAGCTGCCAGGGATCAGTAC 80 |||||| ||||||||||||||||||| || ||||||||||||||||| ||||||| ||| Sbjct 1 ATGCGATGACGACCAGGAATCGGAGGGTTACAAAAGGCCGCAGCTGCTGGGGATCAATAC 60 Query 81 CGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATATGATGAAAGAACAGCTCGCA 140 || ||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||| | Sbjct 61 CGATTACTAGGAGAAAATGTAGCCAAGTTACGGACTAATATGATGAAAGAATAGCTCTCC 120 Query 141 ACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGAATGACATTCGTAAGAAT 200 ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 121 ACGTTCCTTTCCCAGCTTGAAGAGTTCGCTCGTAAACACGAGAATGACATTTGTAAGAAT 180 Query 201 CCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACATTGGTGTGGATCCTCTTGCT 260 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 CCTGCCTTCAGGGCTCAATTCCATGAAATGTGTGCTAACATTGGTGTGGATCCTCTTGCT 240 Query 261 TCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTGACTTCTACTATGAACTTGGA 320 || ||||| |||||||||||||||||||| || ||||||||||||||||||| | || Sbjct 241 TCTAACAAGGGTTTCTGGGCTGAGCTCCTCGGTATTGGTGACTTCTACTATG-A----GA 295 Query 321 GTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACAATGGAGGTTTGATCAGCTTG 380 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 296 GTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATAATGGAGGTTTGATCAGCTTG 355 Query 381 CAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGA-AGGATCGTGAAGCTGTGACTGA 439 ||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||| Sbjct 356 CAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGACA-GACCGTGAAGCTGTGACTGA 414 Query 440 AGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGGGTAGCGGATTTGAGGTTAT 499 |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 415 AGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGCTATTGGGTAGCAGATTTGAGGTTAT 474 Query 500 CACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGGAGCTGAACAAAGACCATAA 559 ||| ||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| Sbjct 475 CACTATTGGCAAGAAAAAGTTTGTTCGTTCGGTACCCACTGAGCTGAACAAAGACCATAA 534 Query 560 CCAGATCTTGGAGTTGGC 577 ||| |||||||||||||| Sbjct 535 CCATATCTTGGAGTTGGC 552 > AT3G30867.1 | Symbols: | pseudogene, putative SNF8 protein homolog, similar to SNF8 protein homolog GB:T04827 GI:7488343 from (Arabidopsis thaliana); blastp match of 70% identity and 4.2e-25 P-value to GP|5670007|gb|AAD46560.1||AF156102 ELL complex EAP30 subunit {Homo sapiens} | chr3:12646169-12647549 FORWARD LENGTH=1381 Length=1381 Score = 213 bits (115), Expect = 2e-54 Identities = 131/139 (94%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240 |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| Sbjct 1045 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAATTCCTTGAAATGTGTGCTAACA 1104 Query 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300 |||||||||||||||||||||| ||||| ||||||| |||||||||||| || ||||||| Sbjct 1105 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTAGGCTGAGCTCCTCGGTATTGGTG 1164 Query 301 ACTTCTACTATGAACTTGG 319 ||||||||||||||||||| Sbjct 1165 ACTTCTACTATGAACTTGG 1183 Score = 163 bits (88), Expect = 2e-39 Identities = 104/112 (93%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 71 GGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATATGATGAAAGA 130 |||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 779 GGATCAATACCGGTTGCTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGA 838 Query 131 ACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG 182 | ||||| | |||||||| ||||||||||||||||||||||||||||||||| Sbjct 839 ATAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAG 890 Score = 147 bits (79), Expect = 2e-34 Identities = 89/94 (95%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 318 GGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACAATGGAGGTTTGATCAGC 377 ||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||| Sbjct 1288 GGAGTTCAGATTATTGAAGTTTGCATGATTACAAGATCACATAATGGAGGTTTGATCAGC 1347 Query 378 TTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAA 411 |||||||||||||||||||||||||||| ||||| Sbjct 1348 TTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAA 1381 Score = 87.9 bits (47), Expect = 1e-16 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17 AAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCGCAGCTGCCAGGG 72 ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| Sbjct 638 AAAGATGCGACGACGACCAGGAATCGGAGGATTACAAAAGGCCGCAACTGCTAGGG 693 > AT3G30875.1 | Symbols: | pseudogene, putative multidrug resistance protein, similar to multidrug resistance protein 1 homolog GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099 P-glycoprotein homologue {Hordeum vulgare subsp. vulgare} | chr3:12647725-12654422 REVERSE LENGTH=6698 Length=6698 Score = 152 bits (82), Expect = 5e-36 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 579 CAGGGCCAAGGCTTTGTGACTGTGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGT 638 ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 6519 CAGAGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCGTGGACATCTGGT 6460 Query 639 CGGGTTATAGATGCTCTCGAAACTTTGTTAGAAG 672 || ||||||||||||||||||||||||||||||| Sbjct 6459 CGCGTTATAGATGCTCTCGAAACTTTGTTAGAAG 6426 Score = 111 bits (60), Expect = 8e-24 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 505 TTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGGAGCTGAACAAAGACCATAACCAGA 564 ||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||| Sbjct 6698 TTGGCAAGAAAAAGCTTGTTCGTACGGTTCCCACGGAGCTGAACAAAGACCATAACCAGA 6639 Query 565 TCTTGGAGTTGGCTC 579 | ||||||||||||| Sbjct 6638 TGTTGGAGTTGGCTC 6624 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38579824896 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5