BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945359
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2673 0.0
> AT4G27020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: vacuole; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G54870.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr4:13568432-13571474 REVERSE LENGTH=1837
Length=1837
Score = 2673 bits (1447), Expect = 0.0
Identities = 1550/1600 (97%), Gaps = 5/1600 (0%)
Strand=Plus/Plus
Query 15 TTAACAATGGCTGCTTCATCGTCTTTGTGCGTCTTCTTCACCACTACCTTAC---TGCTG 71
|||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||
Sbjct 88 TTAACAATGGCTGCTTCATCGTCTCCGTGCATCTTCTTCGCCACTACCTTACTGGTGCTG 147
Query 72 CTTCTCTCTATT-TCATCCGTGAAACTACCATTTCACCCTCGGGACCTGCTTCCGCTTTT 130
|||||| || || ||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 148 CTTCTCACT-TTCTCATCCGGGAAATTACCATTTCACCCTCGAGACCTGCTTCCGCTTTT 206
Query 131 GCCCAGGCAAGTCTCGTGGCCGGTTCTTAATTCTCTCAACACAGCCGTCGATCTCCTCCC 190
|| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 207 TCCGAGGCAAGTCTCGTGGCCGGTAGTCAATTCTCTCAACACTGCCGTCGATCTCCTCCC 266
Query 191 TACTTTCATCGGCTCCGCTTCTGTTAAAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTT 250
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 267 TACTTTCATCGGCTCCGCTTCTGTTAGAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTT 326
Query 251 TTATGAGAACAAAGCTTGGTTAGAGCTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGG 310
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 327 TTATGAGAACAAAGCTTGGTTGGAGCTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGG 386
Query 311 CACACTTCACATTAAGGTCGATAAGGCACATAGTTGGACTTGCATGGATATTTATGTCTT 370
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 387 CACACTTCACATTAAGGTCGATAAGGCACATAGTTGGACGTGCATGGATATTTATGTCTT 446
Query 371 TGTCACTCCATATCGTGTGACATGGGATTGGTACTTTGTTTCGAGGGAGCACACTATGGA 430
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 447 TGTCACACCATATCGTGTGACATGGGATTGGTACTTTGCTTCGAGAGAGCACACTATGGA 506
Query 431 ATTCAAGGAGTGGGAGGGTAAAGCCGAGTATGAATATGTTAAGCAGAAAGGAGTTTCAAT 490
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 507 ATTCAAGGAGTGGGAGGGTAAAGCTGAGTATGAATATGTTAAGCAGAAAGGAGTTTCGAT 566
Query 491 ATTCCTCATGGAAGCAGGGATGTTGGGAACTCTTCGAGCGCTGTGGGATGTCTTCCCTCT 550
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 567 ATTCCTCATGGAAGCAGGGATGTTGGGAACTCTCCGAGCTCTGTGGGATGTCTTCCCTCT 626
Query 551 ATTTACCAATACCGGTTGGGGGGAGAACTCTAATATCGCGTTTCTTAAGAATCATATGGG 610
||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 627 GTTTACCAATACTGGTTGGGGGGAGAATTCTAACATAGCGTTTCTTAAGAATCATATGGG 686
Query 611 TGCTAATTTCTATGCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCA 670
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGCTAATTTCTATCCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCA 746
Query 671 CTCTGGAGACTTACTAGCTATCTCCAAAATCCGTGGGCGGTGGGGTGGTTTTGAGACCCT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CTCTGGAGACTTACTAGCTATCTCCAAAATCCGTGGGCGGTGGGGTGGTTTTGAGACCCT 806
Query 731 TGAGAAGTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGTTTGAGGGATTCTGA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 807 AGAGAAGTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGTTTGAGGGACTCTGA 866
Query 791 AGGGAAACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AGGGAAACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGC 926
Query 851 GATATTGCCATGGGAAGAGTGGTGGGAGTTTGAACAAACCAAGGATGACTCAAATCCCCA 910
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 927 GATATTGCCATGGGAAGAGTGGTGGGAGTTTGAACAAACCAAGGATGACTCGAATCCCCA 986
Query 911 CATTGCATTGCTACCGTTGCATCCTGATTATCGAGCCAAGTTTAATGTTACAGCTGCATG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CATTGCATTGCTACCGTTGCATCCTGATTATCGAGCCAAGTTTAATGTTACAGCTGCATG 1046
Query 971 GGAATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GGAATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTG 1106
Query 1031 GATCGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCACCTTGTTGCTTCTGT 1090
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1107 GATCGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCAACTTGTTGCTTCTGT 1166
Query 1091 CATGACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 CATGACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCT 1226
Query 1151 TAACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAA 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TAACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAA 1286
Query 1211 GCGTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCGGAACAAGATGATTGGATATATAG 1270
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1287 GCGTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCTGAACAAGATGATTGGATATATAG 1346
Query 1271 TGATGGGAAATCAACTTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCT 1330
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CGATGGGAAATCAACGTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCT 1406
Query 1331 TTTCGATCCAATCTCTAGTTCCATTCAAGTCACGGAATTCACGATCAAAGATGCTTACAT 1390
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1407 TTTCGATCCAATCTCTAGTTCCATTCAAGTCACAGAATTCACGATCAAAGATGCTTACAT 1466
Query 1391 GCTCAAGTTTTTCGAGAATAATGCAAGCCGTTTTCCCAAATGGTGCAATGACAATGATGA 1450
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1467 GCTCAAGTTTTTCGAGAGTAATGCAAGTCGTTTTCCCAAATGGTGCAATGACAATGACGT 1526
Query 1451 TGTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAA 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TGTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAA 1586
Query 1511 CACAATGGAGCCATACCCGCATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCA 1570
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 CACAATGGAGCCATACCCACATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCA 1646
Query 1571 CAGACCAAAGAACTGCTAGAACCGAAAAATCAATTGTATT 1610
|||||||||||||||||||||||||||| |||| ||||||
Sbjct 1647 CAGACCAAAGAACTGCTAGAACCGAAAAGTCAACTGTATT 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5