BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945361
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP moti... 2023 0.0
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 4... 688 0.0
> AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554604-13557854 REVERSE LENGTH=1718
Length=1718
Score = 2023 bits (1095), Expect = 0.0
Identities = 1233/1298 (95%), Gaps = 15/1298 (1%)
Strand=Plus/Plus
Query 3 TGCTAGGTTATCGTCGTCATGATGCAGCAGCCACCTCCAGCTTCTAACGGTACTGCCGCA 62
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 74 TGCTAGGTTATCGTCGTCATGATGCAGCAGCCACCTCCAGCTTCCAACGGTGCTGCAACA 133
Query 63 GGGTCAGGGCAGATTCCTTCCGACCAGCAAGCTTATCACCAGCAGCAGCAGTCGTGGATG 122
||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 134 GGGCCAGGGCAGATTCCTTCCGACCAACAAGCTTACCTCCAGCAGCAGCAGTCGTGGATG 193
Query 123 ATGCAGCACCAGCAGCAACAACAAGGTCAGCCGCCTGCAGGATGGAATCAGCAGTCTGTA 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 194 ATGCAGCACCAGCAGCAACAACAAGGTCAGCCGCCTGCAGGATGGAATCAGCAGTCTGCA 253
Query 183 CCGTCTCCTGGCCAACCTCAGCAGCAGCAATATGGTGGTGGTGGTGGATCTCAGAATCCA 242
|||||| |||| ||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 254 CCGTCTTCTGGTCAACCACAGCAGCAGCAGTA---TGGTGGTGGTGGATCTCAGAATCCA 310
Query 243 GGATCAGCTGGTGAGATCCGGTCGCTGTGGATCGGTGACTTGCAGCCATGGATGGAGGAG 302
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 311 GGATCAGCTGGTGAGATCCGGTCCCTGTGGATCGGTGACTTGCAGCCATGGATGGATGAG 370
Query 303 AACTATCTCATGAGCATCTTTGCTCTTACTGGCGATGCTACATCAGCTAAAGTTATCCGC 362
||||||||||||| | |||||| |||||||||||| |||||| ||||||||||||| |||
Sbjct 371 AACTATCTCATGAACGTCTTTGGTCTTACTGGCGAGGCTACAGCAGCTAAAGTTATTCGC 430
Query 363 AATAAACAGAGTGGATATTCAGAAGGTTATGGGTTTATTGAGTTTGTGAACCATGCTACA 422
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 431 AATAAACAGAACGGATATTCAGAAGGTTATGGCTTTATTGAGTTTGTGAACCATGCTACA 490
Query 423 GCTGAGAGGATTTTACAGGCTTACAATGGTGCTACAATGCCCAACAGTGACCAGGCCTTC 482
|||||||||| ||||||| |||||||||||||| | ||||| | |||||| |||||||||
Sbjct 491 GCTGAGAGGAATTTACAGACTTACAATGGTGCTCCGATGCCGAGCAGTGAGCAGGCCTTC 550
Query 483 AGGTTGAACTGGGCTCAGCTTGGAGCTGGAGAGAGACGCCAGGCTGAAGGGCCTGAGCAC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGGTTGAACTGGGCTCAGCTTGGAGCTGGAGAGAGACGCCAGGCTGAAGGGCCTGAGCAC 610
Query 543 ACGGTTTTTGTTGGAGACTTGGCGCCTGATGTTACGGACCACATGCTTACTGAAACGTTT 602
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 611 ACAGTTTTTGTTGGAGACTTGGCACCTGATGTTACCGACCACATGCTTACTGAAACGTTT 670
Query 603 AAGGCTGTGTATTCCTCTGTCAAGGGAGCTAAAGTTGTGACTGATAGGACTACTGGACGG 662
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 671 AAAGCTGTGTATTCCTCTGTCAAGGGAGCTAAAGTTGTGAATGATAGGACTACTGGACGG 730
Query 663 TCCAAGGGATATGGATTTGTCAGGTTTGGGGATGAAAGCGAGCAGATTCGTGCCATGACT 722
|||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 731 TCCAAGGGTTATGGATTTGTCAGGTTTGCGGATGAAAGTGAGCAGATTCGTGCCATGACT 790
Query 723 GAAATGAATGGTCAATACTGCTCATCAAGGCCTATGCGTACTGGTCCAGCTGCCAACAAG 782
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 791 GAAATGAATGGTCAATACTGCTCATCAAGGCCTATGCGTACTGGTCCTGCTGCCAACAAG 850
Query 783 AAGCCTCTTACAATGCAACCAGCTTCATATCAGAACACTCAAGGAAA-CCAAGGAGAAAG 841
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 851 AAGCCTCTTACAATGCAACCAGCTTCATATCAGAACACTCAAGGAAATTC-AGGAGAAAG 909
Query 842 TGATCCAACTAACACAACAATTTTTGTCGGAGCTTTGGATCAAAGTGTAACAGAAGATGA 901
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 910 TGATCCAACTAACACAACAATTTTTGTTGGAGCTGTGGATCAAAGTGTAACAGAAGATGA 969
Query 902 TTTGAAGTCGGTTTTTGGTCAATTTGGTGAACTAGTTCATGTGAAAATACCAGCAGGAAA 961
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 970 TTTGAAGTCAGTTTTTGGTCAATTTGGTGAACTAGTTCATGTGAAAATACCCGCAGGAAA 1029
Query 962 ACGTTGCGGATTTGTTCAATACGCCAATAGGGCATGTGCAGAGCAAGCCCTCTCCT-TGT 1020
||||||||||||||||||||||||||||||||||||||| |||||||| || | || |||
Sbjct 1030 ACGTTGCGGATTTGTTCAATACGCCAATAGGGCATGTGCTGAGCAAGCACT-TTCTGTGT 1088
Query 1021 TGAACGGAACACAAC-TGGGTGGACAAAGCATTCGTCTTTCATGGGGTCGCAGTCCTTCC 1079
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGAACGGAACACAACTTGGG-GGACAAAGCATTCGTCTTTCATGGGGTCGCAGTCCTTCC 1147
Query 1080 AACAAACAGACTCAACCTGATCAAGCCCAGTAtggtggtggtggtggtggAGGATACTAT 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1148 AACAAACAGACTCAACCTGATCAAGCCCAGTATGGTGGTGGTGG------AGGATACTAT 1201
Query 1140 GGGTATCCTCCTCAGGGATATGAAGCATACGGATATGCACCTCCTCCTCAGGACCCTAAC 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GGGTATCCTCCTCAAGGATATGAAGCATACGGATATGCACCTCCTCCTCAGGACCCTAAC 1261
Query 1200 GCCTACTACGGTGGTTATGCTGGGGGCGGCTATGGAAACTACCAGCAGCCTGGTGGCTAC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1262 GCCTACTACGGTGGTTATGCTGGGGGCGGCTATGGAAACTACCAGCAGCCTGGTGGATAC 1321
Query 1260 CAGCAGCAACAGCAGTGAAGCATGATGTGTAAGTCGTG 1297
||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CAGCAGCAACAGCAGTGAAGCATGATGTGTAAGTCGTG 1359
> AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein
45A | chr5:22295383-22298346 FORWARD LENGTH=1413
Length=1413
Score = 688 bits (372), Expect = 0.0
Identities = 711/871 (82%), Gaps = 38/871 (4%)
Strand=Plus/Plus
Query 227 TGGATCTCAGAATCCAGGATCAGCTGGTGA-GATCCGGTCGCTGTGGATCGGTGACTTGC 285
||||||||||||||||||||| ||| | || | | |||| |||||||||| |||||||
Sbjct 173 TGGATCTCAGAATCCAGGATCCGCTAGCGATG-TTAAGTCGTTGTGGATCGGAGACTTGC 231
Query 286 AGCCATGGATGGAGGAGAACTATC-TCATGAGCATCTTTGCTC-TTACTGGCGATGCTAC 343
||| ||||||||| |||||||| | |||||||| ||||||||| | ||||||| |||||
Sbjct 232 AGCAATGGATGGACGAGAACTA-CATCATGAGCGTCTTTGCTCAGT-CTGGCGAGGCTAC 289
Query 344 ATCAGCTAAAGTTATCCGCAATAAACAGA-GTGGATATTCAGAAGGTTATGGGTTTATTG 402
|||||||||||| || || ||||| | || | ||| | || ||||||||||| || ||||
Sbjct 290 ATCAGCTAAAGTCATTCGTAATAAGCTGACG-GGACAATCTGAAGGTTATGGATTCATTG 348
Query 403 AGTTTGTGAACCA-TGCTACAGCTGAGAGGATTTTACAGGCTTACAATGGTGCTACAATG 461
|||| || | ||| | || ||| ||| || |||| ||| |||||||||||||| | |||
Sbjct 349 AGTTCGTCAGCCACT-CTGTAGCAGAGCGGGTTTTGCAGACTTACAATGGTGCTCCCATG 407
Query 462 CCCAACAGTGACCAGGCCTTCAGGTTGAACTGGGCTCA-GCTTGGAGCTGGAGAGAGACG 520
|| | || ||| ||| | || ||| | ||||||||||| || ||| |||||||||| |||
Sbjct 408 CCGAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGC-TGGGGCTGGAGAGAAACG 466
Query 521 ---CCAGGCTGAAGGGCCTGAGCACACGGTTTTTGTTGGAGACTTGGCGCCTGATGTTAC 577
|||| ||||||||||||| || || |||| || || |||||||| ||||| || ||
Sbjct 467 ATTCCAGACTGAAGGGCCTGACCATACCATTTTCGTAGGTGACTTGGCACCTGAGGTGAC 526
Query 578 GGACCACATGCT-TACTGAAACGTTTAAGGCTGTGTATTCCTCTGTC-AAGGGAGCTAAA 635
||| | ||||| | | || || || ||| ||||||| |||||| ||||| ||||||
Sbjct 527 TGACTATATGCTCT-CGGACACATTCAAGAATGTGTATGGGTCTGTCAAAGGG-GCTAAA 584
Query 636 GTTGTGAC-TGATAGGACTACTGGACGGTCCAAGGGATATGGATTTGTCAGGTTTGGGGA 694
|||||| | ||| ||||| |||||| |||||||||| ||||| ||||| ||||||| |||
Sbjct 585 GTTGTG-CTTGACAGGACCACTGGAAGGTCCAAGGGGTATGGGTTTGTTAGGTTTGCGGA 643
Query 695 TGAAAGCGAGCAGATTCGTGCCATGACTGAAATGAATGGTCAATACTGCTC-ATCAAGGC 753
||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 644 TGAAAATGAGCAGATGCGTGCCATGACTGAAATGAATGGTCAATACTGCTCGA-CAAGGC 702
Query 754 CTATGCGTACTGGTCCAGCTGCCAACAAGAA-GCCTCTTACAATGCAACCAGCT-TCATA 811
||||||||| |||||| |||||||| ||||| || |||| | |||||||||||| | ||
Sbjct 703 CTATGCGTATTGGTCCGGCTGCCAATAAGAATGC-TCTTCCGATGCAACCAGCTATG-TA 760
Query 812 TCAGAACACTCAAGGAAACCAA-G--G-AGA-AAGTGATCC-AACTAACACAACAATTTT 865
||| |||||||||||| | || | | ||| || |||||| || |||||||||||||||
Sbjct 761 TCAAAACACTCAAGGAG-CAAATGCTGGAGATAA-TGATCCTAA-TAACACAACAATTTT 817
Query 866 TGTCGGAGCTTTGGAT-CAAAGTGTAACAGAAGATGATTTGAAGTCGGTTTTTGGTCAAT 924
||| |||| | ||||| | || ||| ||||| ||||| || ||||| ||||||||||||
Sbjct 818 TGTTGGAGGTCTGGATGCTAA-TGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAAT 876
Query 925 TTGGTGAACTAGTTCATGTGAAAATACCAGCAGGAAAACGTTGCGGATTTGTTCAATACG 984
|||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||| |
Sbjct 877 TTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATG 936
Query 985 CCAATAGGGCATGTGCAGAGCAAGCCCTCTCCTTGTTGAACGGAACACAACTGGGTGGAC 1044
|||| | ||| | ||||||||| || || || || |||| ||||||||| | |||||||
Sbjct 937 CCAACAAGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGGAC 996
Query 1045 AAAGCATTCGTCTTTCATGGGGTCGCAGTCC 1075
||||||| |||||||| ||||| || |||||
Sbjct 997 AAAGCATCCGTCTTTCGTGGGGACGTAGTCC 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5