BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945375
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26860.2 | Symbols: | Predicted pyridoxal phosphate-depende... 928 0.0
> AT4G26860.2 | Symbols: | Predicted pyridoxal phosphate-dependent
enzyme, YBL036C type | chr4:13503086-13504780 REVERSE LENGTH=1057
Length=1057
Score = 928 bits (502), Expect = 0.0
Identities = 547/569 (96%), Gaps = 2/569 (0%)
Strand=Plus/Plus
Query 11 GCGAGTGGCGATGGCAGCTCCTGCGGTGGAGGCAACCGTCGCAACTGCTCTCCGCTCTGT 70
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 78 GCGATTGGCGATGGCAGCTCCTGCGGTGGAGGCAACCGTCGCAAGTGCTCTCCGCTCTGT 137
Query 71 CATTCTGAGGA-CTCGTAATGCGGCGGAGAAAGTAGGAAGAGATCCCGAGCGGGTCAGAG 129
||||| | || ||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 138 GATTCTTA-GAGCTCGTAAGGCGGCGGAGCAAGTAGGAAGAGATCCCGAGCGGGTCAGGG 196
Query 130 TCCTTCCAGTCTCCAAGACTAAACCCGTCTCACTTATCCGCCAAATCTACGACGCAGGTC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCCTTCCAGTCTCCAAGACTAAACCCGTCTCACTTATCCGCCAAATCTACGACGCAGGTC 256
Query 190 ACCGTTGCTTCGGCGAGAATTACGTTCAAGAAATCATCGATAAAGCTCCGCAGCTTCCGG 249
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 257 ACCGTTGCTTCGGCGAGAATTACGTTCAAGAAATCATCGATAAAGCTCCACAGCTTCCGG 316
Query 250 ACGATATAGAGTGGCATTTCGTGGGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA 309
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AAGATATAGAGTGGCATTTCGTGGGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA 376
Query 310 CTGGAGTCCCAAACTTGGCAATGGTTCATGGTGTGGATGGAGAAAAGGTGGCTAACCATC 369
||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 377 CTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAGGTAGCAAATCATC 436
Query 370 TAGATCGAGCTGTTTCAACCCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACA 429
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TAGATCGAGCTGTTTCAAATCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACA 496
Query 430 CAAGCGGAGAAGTTTCTAAATCTGGAATCGAACCTTCCAGCGTTGTAGAGCTAGCAAGAC 489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 497 CAAGCGGAGAAGTTTCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGAC 556
Query 490 ATGTGAAGCAGCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGATGCCTG 549
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ATGTGAAACATCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGATGCCTG 616
Query 550 ATTATACTTCTACTCCAGAGAACTTCAGG 578
||||||| ||||| |||||||||||||||
Sbjct 617 ATTATACGTCTACCCCAGAGAACTTCAGG 645
Score = 311 bits (168), Expect = 7e-84
Identities = 188/197 (95%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 578 GACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAGGATCAATT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAGGATCAATT 734
Query 638 TGAACTGTCCATGGGGATGTCTGGAGACTTTGAGCTAGCGATTGAGATGGGAAGCACCAA 697
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 735 TGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGATTGAGATGGGAAGCACCAA 794
Query 698 TGTGAGGGTTGGTTCCACCATTTTCGGTCCAAGAGAGTACCCCAA-AAAAGCAACTTAGC 756
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 795 TGTGAGGGTTGGTTCCACCATTTTCGGACCAAGAGAGTACCCCAAGAAAA-CAACTTAGC 853
Query 757 TACTATTTCCTCAAACA 773
|||||| | |||||||
Sbjct 854 TACTATG-C-TCAAACA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5