BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945389
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26720.1 | Symbols: PPX1, PPX-1 | protein phosphatase X 1 | ... 1626 0.0
> AT4G26720.1 | Symbols: PPX1, PPX-1 | protein phosphatase X 1
| chr4:13470032-13472342 REVERSE LENGTH=1471
Length=1471
Score = 1626 bits (880), Expect = 0.0
Identities = 932/958 (97%), Gaps = 0/958 (0%)
Strand=Plus/Plus
Query 1 AGAGGAGAGGAGAGGTGAAAATGTCAGACCTAGATCGGCAGATAGAGCAGCTGAAGCGAT 60
|||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 169 AGAGGAGAGGAGAGGTAAAAATGTCAGACCTAGATCGGCAAATAGGGCAGCTTAAGCGAT 228
Query 61 GCGAACCATTGAGCGAATCGGAGGTGAAAGCTCTTTGTCTCAAAGCCATGGAAATTCTTG 120
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 229 GCGAACCATTGAGCGAATCGGAGGTGAAGGCTCTTTGCCTCAAAGCCATGGAAATTCTTG 288
Query 121 TTGAAGAAAGTAATGTTCAAAGAGTTGACGCCCCTGTCACTTTATGTGGTGACATCCATG 180
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 289 TTGAAGAGAGTAATGTTCAGAGAGTTGATGCCCCTGTCACTTTATGTGGTGACATCCATG 348
Query 181 GGCAGTTCTATGACATGATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAACT 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGCAGTTCTATGATATGATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAACT 408
Query 241 ATTTGTTTATGGGAGACTTTGTTGATCGTGGATATTATTCAGTTGAGACATTTCTACTTC 300
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 ATTTGTTTATGGGAGATTTTGTTGATCGTGGATATTATTCGGTTGAGACATTTCTACTTC 468
Query 301 TACTCGCACTCAAGGTTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TACTCGCACTCAAGGTTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAA 528
Query 361 GCAGGCAGATCACACAGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCTT 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GCAGGCAAATCACACAGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCTT 588
Query 421 CAAATGTCTGGAGATACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTCGTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 589 CAAATGTCTGGAGATACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTTGTGG 648
Query 481 AGAACAAGATATTCTGTGTTCATGGTGGTCTCTCTCCAGCTATTACGACTCTTGATCAGA 540
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 649 AGAACAAGATATTCTGTGTTCATGGTGGTCTTTCTCCAGCTATTATGACTCTTGATCAGA 708
Query 541 TTAGGACAATTGACCGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGACCTCCTAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 709 TTAGGACAATTGACCGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTCCTAT 768
Query 601 GGTCTGATCCTGAAGATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGTCTGATCCTGAAGATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCC 828
Query 661 TTTTTGGTGGCAGTGTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATAGCCC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTTTTGGTGGCAGTGTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATAGCCC 888
Query 721 GAGCCCATCAACTAGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGCCCATCAACTAGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAG 948
Query 781 TGTGGTCAGCCCCGAATTACTGTTACAGATGCGGTAATGTGGCTTCGATTCTAGAGCTCG 840
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 949 TGTGGTCAGCCCCAAATTACTGTTACAGATGCGGTAATGTGGCTTCAATTCTAGAGCTTG 1008
Query 841 ACGAGAATCTAAATAAAGAATTCCGTGTGTTCGATGCAGCCCAGCAGGACTCGAGAGGGC 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 ACGAGAATCTAAATAAAGAATTCCGTGTGTTTGATGCAGCCCAGCAGGACTCGAGAGGGC 1068
Query 901 CTCCTGCCAAAAAACCTGCCCCTGATTACTTCCTATAATGGACAAAACTTCGAAAACC 958
|||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1069 CTCCCGCCAAAAAGCCGGCCCCTGATTACTTCCTATAATGGGCAAAACTTCGAAAACC 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5