BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945390
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26710.1 | Symbols: | ATPase, V0 complex, subunit E | chr4:... 475 1e-133
AT5G55290.1 | Symbols: | ATPase, V0 complex, subunit E | chr5:... 237 6e-62
> AT4G26710.1 | Symbols: | ATPase, V0 complex, subunit E | chr4:13468549-13469935
FORWARD LENGTH=553
Length=553
Score = 475 bits (257), Expect = 1e-133
Identities = 359/403 (89%), Gaps = 28/403 (7%)
Strand=Plus/Plus
Query 3 TCTCATTTGGGATCAGACATGGCTTTTCTTGTAACATCCCTAATATTCGCTGTCGTCGGC 62
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 57 TCTCA-TTGGGATCAGACATGGCTTTTGTTGTAACATCCCTGATATTCGCTGTCGTAGGC 115
Query 63 ATCATTGCTTCAATCTGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTA 122
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ATCATTGCTTCGATATGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTA 175
Query 123 CATCTTACCTTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATAC 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CATCTTACATTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATAC 235
Query 183 ATTGCGCAGATGAAGCCTCTCATTGTCCCTATCCTAAGCGAGGTAGAGTAGAAACTAATC 242
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||| | ||
Sbjct 236 ATTGCGCAGATGAACCCTCTCATTGTCCCTATCTTAAGCGAGGTGGAGTAGAAACCATTC 295
Query 243 TACTCAAACAAGAACTCATCCATGTTCTTAAACTAGGAAATCAATGCACAAATTTGAGTA 302
||||||||| || | | | | | | | | |||||||||||||||
Sbjct 296 TACTCAAACTAGGA---A---A----C-----C-A--A--T----GCACAAATTTGAGTA 331
Query 303 AGAGCCCTGCTGCTCTTTCTGTATCTTCTTCAAACATATTTGTTTTCCCCTTTGTAATTC 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AGAGCCCCGCTGCTCTTTCTGTATCTTCTTCAAACATATTTGTTTTCCCCTTTGTAATTC 391
Query 363 TTATC-TCGGTGTGGAACAACCGAAACTCTTCCCCTCTTTACT 404
||||| | ||||||||||||| |||||| | ||||||||||||
Sbjct 392 TTATCGT-GGTGTGGAACAAC-GAAACTATCCCCCTCTTTACT 432
> AT5G55290.1 | Symbols: | ATPase, V0 complex, subunit E | chr5:22422887-22424268
REVERSE LENGTH=545
Length=545
Score = 237 bits (128), Expect = 6e-62
Identities = 208/247 (84%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 12 GGATCAGACATGGCTTTTCTTGTAACATCCCTAATATTCGCT-GTCGTCGGCATCATTGC 70
|||||| |||||| ||| ||| ||||| ||||||| |||| | ||||| || || |||||
Sbjct 174 GGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCG-TCGTCGTTGGGATAATTGC 232
Query 71 TTCAATCTGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTACATCTTAC 130
||| | ||| ||||||||||| ||||| |||||||||||| |||||| ||||||||||
Sbjct 233 TTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTGCTACATCTTAC 292
Query 131 CTTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATACATTGCGCA 190
||||||||| || || || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 293 CTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATTGTATATATTGCACA 352
Query 191 GATGAAGCCTCTCATTGTCCCTATCCTAAGCGAGGTAGAGTAGAAACTAATCTACTCAAA 250
|||||| ||||| |||||||| || |||||||| |||||||| | |||||||| |
Sbjct 353 GATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAGATTCC--TCTACTCAGA 410
Query 251 CAAGAAC 257
|||||||
Sbjct 411 CAAGAAC 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5