BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945395
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2436 0.0
> AT4G26680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13454853-13456630 FORWARD LENGTH=1778
Length=1778
Score = 2436 bits (1319), Expect = 0.0
Identities = 1505/1595 (94%), Gaps = 12/1595 (1%)
Strand=Plus/Plus
Query 21 ATGATCCGCGTAAGCA-CATGTGTTAATCGCCGTCTGTGTTATCAGTACTCAAGTTTTGC 79
||||| ||| |||||| | | ||||||||||||||| ||||||| | ||||||||||||
Sbjct 1 ATGATTCGCATAAGCATC-GGAGTTAATCGCCGTCTGCGTTATCAATTCTCAAGTTTTGC 59
Query 80 TGGCTATGGTCGATCTGAAAACCCTAGGCT-TTCTAAAAATCCAC-CCGCTGCAAACATC 137
|||||| || ||||||||||||||||||| || ||||| | | | ||||||||||| |
Sbjct 60 TGGCTACAGTGGATCTGAAAACCCTAGGCTCTT-TAAAACT-CTCGGCGCTGCAAACACC 117
Query 138 CCTATTCCTCACAGAAGCAATCCTGAACCTAAAGGCCAAGATCTTGATTTCGTCAATGTC 197
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCGATTCCTCACAGAAGGAATCCTGAACCTAAAGGCCAAGATCTTGATTTCGTCAATGTT 177
Query 198 GCTCATAGCCACCTGATTCAATCTGATTGGGATAAGCTTAATAAGCTATCAGACCACTTA 257
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 GCTCATAGCCACCTGATTCAATCTGATTGGGATAAGCTAAATAAGCTATCAGACCACTTG 237
Query 258 GATTCATTTAGGGTCAAGAACGTACTACTGAAGATTCAGAAAGATTATCTTCTTTCT-TT 316
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 238 GATTCATTTAGGGTCAAGAACGTATTACTGAAGATACAGAAAGATTATCTTCTTTCTCTT 297
Query 317 CGAGTTCTTCAATTGGGCGAAAACCCGAAACCCAGCTTCTCACTCTCTTGAAACCCATGC 376
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 -GAATTCTTCAATTGGGCGAAAACCCGAAACCCAGGTTCTCACTCTCTTGAAACCCATGC 356
Query 377 TATTGTTCTTCACACTCTTACTAAAAACCGCAAGTTCAAGTCTGCAGAGTCCATTTTGAG 436
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATAGTTCTTCACACTCTCACTAAAAACCGCAAGTTCAAGTCTGCAGAGTCCATTTTGAG 416
Query 437 AGATGTACTTGTAAATGGTGGCGTGGATTTGCCTGCCAAAGTCTTTGATGCCTTGTTGTA 496
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 417 AGATGTACTTGTAAATGGTGGTGTGGATTTGCCTGCCAAAGTATTTGATGCTTTGTTGTA 476
Query 497 TTCGTACCGGGAATGTGACTCTACGCCTAGAGTGTTTGATTCACTCTTCAAAACTTTTGC 556
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTCGTACCGGGAATGTGATTCTACGCCTAGAGTGTTTGATTCACTCTTCAAAACTTTTGC 536
Query 557 TCATTTGAAGAAATTCAGAAATGCCACTGATACTTTTATGCAGATGAAGGATTACGGGTT 616
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 537 TCATTTGAAGAAATTCAGAAATGCTACAGATACTTTTATGCAGATGAAGGATTATGGGTT 596
Query 617 TCTTCCAACTGTTGAATCTTGCAATGCTTACATGAGCTCACTACTTGGTCAAGGGAGGGT 676
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 597 TCTTCCAACTGTTGAATCTTGCAATGCTTACATGAGTTCATTACTTGGTCAAGGGAGGGT 656
Query 677 GGATATTGCTCTGAGGTTTTACAGAGAAATGCGGCGGTGTAAGATTTCCCCAAACACATA 736
|||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 657 GGATATTGCTTTGAGGTTTTACAGAGAAATGCGGCGGTGTAAGATATCTCCAAACCCATA 716
Query 737 CACTCTTAACATGGTTATGTCAGGTTATTGTAGGTCTGGAAAACTTGACAAGGGCATTGA 796
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CACTCTCAACATGGTAATGTCAGGTTATTGTAGGTCTGGAAAACTTGACAAGGGCATTGA 776
Query 797 GTTGCTACAAGATATGGAAAGATTGGGTTTTCGGGCCACTCATGTGTCGTATAATACTTT 856
||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 777 GTTACTACAAGACATGGAAAGATTGGGTTTTCGGGCTACAGATGTGTCGTATAATACTTT 836
Query 857 GATAGCCGGGCATTGCGAAAAGGGTCTTTTGAGCTCAGCTTTGAAGCTTAAGAACATGAT 916
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GATAGCCGGACATTGCGAAAAGGGTCTTTTGAGCTCAGCTTTGAAGCTTAAGAACATGAT 896
Query 917 GGGAAAGAATGGCT-TGCAGCCTAGTGTGGTTACTTTTAACACTCTCATCCATGGGTTTT 975
|||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 897 GGGAAAGAGTGG-TCTGCAGCCTAATGTGGTTACTTTTAACACTCTCATCCATGGGTTTT 955
Query 976 GCAGAGCTGTGAAGCTGCAAGAAGCTAGTAAGGTTTTCGGTGAGATGAAAGCGCTCAACT 1035
|||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 956 GCAGAGCTATGAAGTTACAAGAAGCTAGTAAGGTTTTCGGTGAGATGAAAGCGGTCAACG 1015
Query 1036 TGCCTCCCAACACTGTCACGTATAACACGTTGATTAATGGGTATAGCCAACAGGGTGATC 1095
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1016 TGGCTCCCAACACTGTCACGTATAACACGTTGATTAATGGGTACAGCCAACAGGGTGATC 1075
Query 1096 ACGAGATGGCGTTCCGGTTTTATGAAGATATGGTCTGCAACGGAATTCAGCGTGACATTT 1155
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1076 ACGAAATGGCGTTCCGGTTTTATGAAGATATGGTCTGCAACGGGATTCAACGTGACATTT 1135
Query 1156 TGACGTACAACACTTTGATCTTGGGACTATGCAAACAAGCTAAGACGAGGAAAGCTGCAC 1215
||||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGACGTACAACGCGTTGATATTTGGACTATGCAAACAAGCTAAGACGAGGAAAGCTGCAC 1195
Query 1216 AGTTTGTTAAAGAACTCGACAAAGAGAATTTGGTGCCAAACTCGTCAACCTTCTCTGCGC 1275
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 AGTTTGTTAAAGAACTCGACAAAGAGAATTTGGTGCCAAACTCGTCAACCTTTTCTGCGC 1255
Query 1276 TGATAATGGGGCAATGCGTGAGGAGAAATGCAGACCGTGGTTTTGAACTGTACAAAAGCA 1335
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1256 TAATAATGGGACAATGCGTGAGGAAAAATGCAGACCGTGGTTTTGAACTGTACAAAAGCA 1315
Query 1336 TGATTAGGAGCGGTTGCCATCCGAATGAACAAACATTCAACATATTGATTTCTGCCTTCT 1395
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1316 TGATTAGGAGTGGTTGCCATCCGAATGAACAAACATTCAACATGCTGGTTTCTGCCTTCT 1375
Query 1396 GTAAGAATGAGGATTTTGATGGAGCAGCTCAAGTGCTAAGGGAAATGGTCAGAAGATCAA 1455
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1376 GTAGGAATGAGGATTTTGATGGAGCATCTCAAGTGCTAAGGGAAATGGTCAGAAGATCAA 1435
Query 1456 TTCCTCTAAATTCAAGGACTGTTCATCAGGTCTGCAATGGACTTAATCATCAAGGGAAAG 1515
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1436 TTCCTCTTGATTCAAGGACTGTTCATCAGGTCTGCAATGGACTTAAGCATCAAGGGAAAG 1495
Query 1516 ACCAACTTGTGAAAGAGTTGTTACAGGAGATGGAAGGGAAAAAGTTTCTACAAGAACCTT 1575
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1496 ACCAACTTGTGAAAAAGTTGTTACAGGAGATGGAAGGGAAAAAGTTTCTACAAGAATCTT 1555
Query 1576 T-AGATAACTGAGAAGCAGAATGTATTAACCAAAA 1609
| | ||||||||||||||||| |||||||||||||
Sbjct 1556 TTA-ATAACTGAGAAGCAGAAGGTATTAACCAAAA 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5