BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945396

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26670.1 | Symbols:  | Mitochondrial import inner membrane t...   108    3e-23


> AT4G26670.1 | Symbols:  | Mitochondrial import inner membrane 
translocase subunit Tim17/Tim22/Tim23 family protein | chr4:13452117-13453984 
FORWARD LENGTH=1178
Length=1178

 Score =  108 bits (58),  Expect = 3e-23
 Identities = 67/71 (94%), Gaps = 1/71 (1%)
 Strand=Plus/Minus

Query  157   CCCGTAATGATTTTGTCAAAGAACGCCTCCGGCAGAAACAAGGCAAGTGATTTCAGATTC  216
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  1178  CCCGTAATGATTTTGTCAAAGAACGCCTCAGGCAGAAACAAGGCAAGTGATTTCAGATTT  1119

Query  217   ACAT-GATATT  226
             |||| || |||
Sbjct  1118  ACATTGAGATT  1108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5