BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945400
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26670.1 | Symbols: | Mitochondrial import inner membrane t... 1046 0.0
AT5G55510.1 | Symbols: | Mitochondrial import inner membrane t... 531 4e-150
> AT4G26670.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr4:13452117-13453984
FORWARD LENGTH=1178
Length=1178
Score = 1046 bits (566), Expect = 0.0
Identities = 625/654 (96%), Gaps = 1/654 (0%)
Strand=Plus/Plus
Query 1 TCAGGCTTCAACTTTTAGCTATGGCGGCCAATGATTCTTCAAAAGCTATTGACATCGACG 60
|||| |||| | ||| |||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 122 TCAGACTTC-AGTTTAAGCTATGGCGGCGAACGATTCTTCAAATGCTATTGACATCGACG 180
Query 61 GGAACCTCGACTCCGATTCAAACCTTAACACTGACGGTGACGAAGCGACAGATAATGATT 120
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 181 GGAATCTCGACTCCGATTCGAATCTTAACACTGACGGTGACGAAGCGACCGATAATGATT 240
Query 121 CCTCAAAGGCATTGGCTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTTGCCGGAG 180
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CCTCGAAGGCATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAG 300
Query 181 ATGCTGCTGGTGGCGCCGTCATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGCTGCTGGTGGCGCCGTTATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 360
Query 241 AGAAAGGCTTTAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAAAGGCTTCAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 420
Query 301 TATCTGGAGTCCACAGTTTGGTTGTTTGTCTTCTGAAGCAAATCCGAGGCAAAGATGACG 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACG 480
Query 361 CCATTAATGTTGGAGTTGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 540
Query 421 CACAGGCTCTACTACAGAGCTGTCTTACGTTTGGGGCTTTCTCTTTTATACTCGAGGGAC 480
|||||||||| |||||||| ||||| ||||||||||| ||||||||||| || |||||||
Sbjct 541 CACAGGCTCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGAGGGAC 600
Query 481 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 660
Query 541 TCCAAGATCATCATCGTCCTTTACCACTCTCTCTTGCTCTCCCGATCCCAGAAGATATCA 600
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 661 TCCAAGATCATCATCGTGCTTTACCACTCTCTCTTGCTCTCCCGATCCCTGAAGAAATCA 720
Query 601 AAGGAGCCTTCTCTTCTTTCTGCAAGTCCTTAGCTAAACCCAGGAAGTTCTAAT 654
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 AAGGAGCCTTTTCTTCTTTCTGCAAGTCCTTAGCTAAACCAAGGAAGTTCTAAT 774
> AT5G55510.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr5:22486426-22488015
REVERSE LENGTH=843
Length=843
Score = 531 bits (287), Expect = 4e-150
Identities = 538/655 (82%), Gaps = 34/655 (5%)
Strand=Plus/Plus
Query 17 AGCTATGGCGGCCAATG-ATTCTTCAAAAGCTATTGACATCGACGGGAACCTCGACTCCG 75
||||||||||||| | | |||||||||| |||||| || |||| || ||||| ||||
Sbjct 96 AGCTATGGCGGCCGA-GAATTCTTCAAACGCTATTAACGTCGATACGAGTCTCGATTCCG 154
Query 76 ATTC-AAACCTTAACAC-TGACGGTGACGA-AGCGACAGATAATGA---TTCCTC-AAAG 128
|||| ||||| |||| | ||||| | | || | ||| ||| |||| ||| || |||
Sbjct 155 ATTCAAAACC-TAAC-CGTGACGCTAATGATA-TGACTGATCATGACTCTTCTTCTAAA- 210
Query 129 GCATTGGCTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTT-GCCGGAGATGCTGC 187
||||||| || ||||||||||| |||||||||||| | | |||| ||||||||||||||
Sbjct 211 GCATTGG-TA--ATCCCTGCTCCCGCCGTTTGTCTTGTAC-GTTTCGCCGGAGATGCTGC 266
Query 188 TGGTGGCGCCGTCATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGG 247
| ||||||| ||||||||||| | || || ||||| || |||||||| |||||||||||
Sbjct 267 TAGTGGCGCATTCATGGGCTCTGTATTTGGCTATGGCTCTGGATTGTTTAAGAAGAAAGG 326
Query 248 CTTTAAAGGATCATTTGCAGATGCAGGG-CAGTCTGCTAAGACTTTTGCTGTTTTATCTG 306
|||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||||
Sbjct 327 GTTTAAAGGATCATTTGTGGATGC-GGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTG 385
Query 307 GAGTCCACAGTTTGGTTGTTTGTCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTA 366
|||| |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 386 GAGTACACAGTTTAGTTGTTTGCCTTCTAAAACAAATACGAGGCAAAGATGACGCCATTA 445
Query 367 ATGTTGGAGTTGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGG 426
||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || || |
Sbjct 446 ATGTTGGAGTTGCTGGGTGTTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAG 505
Query 427 CTCTACTACAGAGCTGTCTTACGTTTGGGGCTTTCTCTTTTATACTCGAGGGACTCAACA 486
| | |||||||| ||||| || ||||| || ||||| || || || || ||||||||||
Sbjct 506 CAATGCTACAGAGTTGTCTCACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGACTCAACA 565
Query 487 AAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGTTCCAAG 546
|||||||||| |||||||| ||||| |||||||| ||||| |||||| || || || |
Sbjct 566 AAAGACAAACGGCTTTGGCTCACTCTGTCTCGTTTAGACAACAAACCAGAA-GTCCCCA- 623
Query 547 ATCATCATCGTCCTTTACCACT-CTCTC-TTG-CTCTCCCGATCCCA-GAAGATATCAAA 602
| ||| || | | ||| || ||||| ||| || |||| |||| | || || ||||||
Sbjct 624 A-CATGAT--T--T--ACCGCTGCTCTCGTTGGCTATCCCAATCC-ATGATGAAATCAAA 675
Query 603 GGAGCCTTCTCTTCTTTCTGCAAGTCCTTAGCTAAACCCAGGAAGTTCTAATTTC 657
||||| ||||||||||||||||| |||||| | ||||||| |||| || ||||||
Sbjct 676 GGAGCTTTCTCTTCTTTCTGCAACTCCTTAACGAAACCCAAGAAGCTCAAATTTC 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5