BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945403
Length=403
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19553.1 | Symbols: | Amino acid permease family protein | ... 183 8e-46
AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13... 71.3 7e-12
> AT3G19553.1 | Symbols: | Amino acid permease family protein
| chr3:6790742-6792919 REVERSE LENGTH=1912
Length=1912
Score = 183 bits (99), Expect = 8e-46
Identities = 103/105 (98%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 269 CATTCTGGTGATGGTTTTGGCCGCCCCGAAGACATTTCTGATCAGCGGTGTGATCATGGT 328
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1450 CATTCTTGTGATGGTTTTGGCCGCCCCGAAGACATTTCTGATCAGCGGTGTGATCATAGT 1509
Query 329 TCTTGGATTCTGCTTGTACCCATTCTTAACACTCGTTAAGGAGAA 373
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TCTTGGATTCTGCTTGTACCCATTCTTAACACTCGTTAAGGAGAA 1554
> AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13440909-13445851
REVERSE LENGTH=1946
Length=1946
Score = 71.3 bits (38), Expect = 7e-12
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 215 CGTTGTTAGAAAGGAAGCTGAGAATTGCGACTGCTTACAAG 255
|||||||||||||||||||||||||||| ||||||||||||
Sbjct 32 CGTTGTTAGAAAGGAAGCTGAGAATTGCAACTGCTTACAAG 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19051476871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5