BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945405
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26640.2 | Symbols: WRKY20, AtWRKY20 | WRKY family transcrip... 2826 0.0
> AT4G26640.2 | Symbols: WRKY20, AtWRKY20 | WRKY family transcription
factor family protein | chr4:13437071-13440835 REVERSE
LENGTH=2043
Length=2043
Score = 2826 bits (1530), Expect = 0.0
Identities = 1667/1731 (96%), Gaps = 18/1731 (1%)
Strand=Plus/Plus
Query 1 TACCCTTGCGATTCTCTGAAATGAACCCTCAAGCTAATGACCGGAAGGAGTTTCAGGGAG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TACCCTTGCGAATCTCTGAAATGAACCCTCAAGCTAATGACCGGAAGGAGTTTCAGGGAG 182
Query 61 ATTGCTCGGCGACGGGAGATCTCACGGCAAGGCACGATTCAGCTGGAGGAGGAGGAAATG 120
|||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 183 ATTGTTCGGCGACGGGAGATCTCACGGCAAAGCACGATTCAGCT------GGAGGAAACG 236
Query 121 GAGGTGGAGGTGCTAGGTATAAGCTGATGTCACCGGCGAAGCTTCCGATCTCGAGGTCGA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 GAGGTGGAGGTGCTAGGTATAAGCTGATGTCACCGGCCAAGCTTCCGATCTCGAGGTCGA 296
Query 181 CTGATATCACGATTCCTCCTGGGTTGAGTCCGACTTCGTTTTTGGAATCTCCTGTTTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGATATCACGATTCCTCCTGGGTTGAGTCCGACTTCGTTTTTGGAATCTCCTGTTTTCA 356
Query 241 TCTCCAACATCAAGCCAGAACCTTCCCCTACTACTGGTTCTTTGTTCAAGCCTCGACCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTCCAACATCAAGCCAGAACCTTCCCCTACTACTGGTTCTTTGTTCAAGCCTCGACCAG 416
Query 301 TGCACATTTCTGCTAGCTCAAGTTCTTATACAGGTAGGGCGTTCCATCAGAACACCTTTA 360
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 417 TGCACATTTCTGCTAGCTCAAGTTCTTATACAGGCAGGGGGTTCCATCAGAACACCTTTA 476
Query 361 CTGAGCAGAAGTCCAGTGAATTTGAGTTCAGACCTCCTGCATCCAATATGGTTTATGCAG 420
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 477 CTGAGCAGAAGTCCAGTGAATTTGAGTTCAGACCTCCTGCATCAAATATGGTATATGCAG 536
Query 421 AGCTTGGCAAGCAT-AGAAGTGAGCCACCGGTACAATTTCAAGGCCAGGGCCATGGATCC 479
||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 537 AGCTTGGCAAG-ATTAGAAGTGAGCCACCAGTACATTTTCAAGGCCAGGGCCATGGATCC 595
Query 480 GCACACTCACCTTCTTC-ACTCAGTGATGCTGCAGGTTCCTCAAGTGAGCTAAGCCGGCC 538
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCACACTCACCTTCTTCGA-TCAGTGATGCTGCAGGTTCCTCAAGTGAGCTAAGCCGGCC 654
Query 539 AACTCCTCCTCGTCAGATGACACCAACGAGCTCAGATATTCCGGCTGGATCTGATCAAGA 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AACTCCTCCTTGTCAGATGACACCAACGAGCTCAGATATTCCGGCTGGATCTGATCAAGA 714
Query 599 GGAATCAATCCAGACTTCCCAAAATGACCCCAGAGGAAGCACACCATCCATCTTGGCTGA 658
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 715 GGAATCAATCCAGACTTCCCAAAATGACTCCAGAGGAAGCACTCCATCCATCTTGGCTGA 774
Query 659 TGATGGTTATAACTGGAGAAAATATGGTCAAAAACATGTCAAAGGGAGTGAATTTCCCCG 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 775 TGATGGTTATAACTGGAGAAAATATGGTCAAAAGCATGTCAAAGGGAGTGAATTTCCCCG 834
Query 719 GAGCTATTATAAATGTACACATCCTAATTGTGAAGTGAAAAAGTTATTTGAAAGATCTCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAGCTATTATAAATGTACACATCCTAATTGTGAAGTGAAAAAGTTATTTGAAAGATCTCA 894
Query 779 TGATGGGCAGATCACCGATATTATATACAAGGGTACACATGACCATCCTAAACCTCAACC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGATGGGCAGATCACCGATATTATATACAAGGGTACACATGACCATCCTAAACCTCAACC 954
Query 839 TGGTCGCCGAAACTCTGGTGGTCTTGGTATGGCTGCACAAGAAGAAAGGCTAGACAAGTA 898
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 955 TGGTCGCCGAAACTCTGGTGGT------ATGGCTGCACAAGAAGAAAGGCTAGACAAGTA 1008
Query 899 TCCTTCTTCAACTGGCCGAGATGAGAAGGGATCTGGCGCCTACAACTTGTCTCACCCCAA 958
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1009 TCCTTCTTCAACTGGCCGAGATGAGAAGGGATCTGGCGTCTACAACTTGTCTAACCCCAA 1068
Query 959 TGAGCAAACTGGTAACCCTGAAATACCTCCTGTCTCAGCATCTGAGGATGGTGGAGAAGC 1018
||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 1069 TGAACAAACTGGTAACCCTGAAGTACCTCCTATCTCAGCATCTGACGATGGTGGAGAAGC 1128
Query 1019 TGCAGCGTCAAATAGGAATAAAGATGAGCCGGACGATGATGATCCATTCTCAAAACGGAG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GGCAGCGTCAAATAGGAATAAAGATGAGCCGGACGATGATGATCCATTCTCAAAACGGAG 1188
Query 1079 GAGGATGGATGGTGCGATGGAAATAACTCCACTTGTGAAACCCATCCGAGAGCCTCGGGT 1138
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1189 GAGGATGGAGGGTGCGATGGAAATAACTCCACTAGTGAAACCCATCCGGGAGCCTCGGGT 1248
Query 1139 TGTTGTTCAAACTCTGAGTGAGGTTGACATACTGGATGATGGTTATAGATGGCGTAAATA 1198
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1249 TGTTGTTCAAACTCTGAGTGAGGTTGACATTCTGGATGATGGTTATAGATGGCGCAAATA 1308
Query 1199 TGGGCAGAAAGTCGTAAGGGGGAACCCAAATCCCAGGAGCTATTACAAATGCACAGCTCC 1258
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1309 TGGGCAGAAAGTCGTAAGGGGGAACCCAAATCCCAGGAGCTACTACAAATGCACAGCTCA 1368
Query 1259 TA-ATTGCCAAGTGAGAAAACACGTGGAGAGGGCATCACATGACCCAAAAGCTGTAATAA 1317
| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1369 TGGAT-GCCCAGTGAGAAAACACGTGGAGAGAGCATCACATGATCCAAAAGCTGTAATAA 1427
Query 1318 CAACATACGAAGGCAAACACGATCACGATGTTCCCACTTCAAAGTCTAGCAGCAATCACG 1377
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1428 CAACATACGAAGGCAAACACGATCATGATGTTCCCACTTCAAAGTCTAGCAGCAATCACG 1487
Query 1378 ACATCCAGCCTCGGTTCAGACCAGATGAAACAGACACCATCAGCCTCAATCTTGGTGTTG 1437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AAATCCAGCCTCGGTTCAGACCAGATGAAACAGACACCATCAGCCTCAATCTTGGTGTTG 1547
Query 1438 GAATCTCATCTGATGGACCTAACCACGCTTCCAACGAGCATCAGCATCAGAATCAACAAC 1497
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1548 GAATCTCATCTGATGGACCTAACCACGCTTCCAACGAACATCAGCACCAGAATCAACAAC 1607
Query 1498 TCGTCAACCAAACTCACCCAAATGGAGTCAATTTCAGGTTTGTTCATGCTAGTCCCATGT 1557
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TTGTCAACCAAACTCACCCAAATGGAGTCAATTTCAGGTTTGTTCATGCTAGTCCCATGT 1667
Query 1558 CATCCTACTATGCTAGCTTAAATAGCGGTATGAATCAGTACGGCCAGAGAGAAACAAAGA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 CATCCTACTATGCTAGCTTAAATAGCGGTATGAATCAGTACGGCCAGAGAGAAACAAAGA 1727
Query 1618 ACGAGACTCAGAATGGCGACATCTCGTCCTTGAACAATTCATCTTACCCATATCCGCCCA 1677
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 ACGAGACTCAAAATGGTGACATCTCGTCCTTGAACAATTCATCTTACCCATATCCGCCCA 1787
Query 1678 ACATAGGGAGAATACAATCGGGTCCTTAAAAGAAAAAGTAAGCAACAGTAT 1728
|||| |||||| ||||||||||||| ||||| ||||||||||||||| |||
Sbjct 1788 ACATGGGGAGAGTACAATCGGGTCCGTAAAACAAAAAGTAAGCAACATTAT 1838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5