BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945424
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26490.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1330 0.0
AT4G26488.1 | Symbols: | other RNA | chr4:13380345-13381625 RE... 1013 0.0
> AT4G26490.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:13380409-13381440
FORWARD LENGTH=1032
Length=1032
Score = 1330 bits (720), Expect = 0.0
Identities = 805/847 (95%), Gaps = 2/847 (0%)
Strand=Plus/Plus
Query 5 ATTGATCACATAACTCATGCCAAATCAACCTCCTCTTCCTCCTCCACCGCAGTTGCAACC 64
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATTGATCACATAACTCATGCCAAATCTACCTCATCTTCCTCCTCCACCGCAGTTGCAACC 60
Query 65 GCCCGAAACGCCATCATGGGAAACTCCATCTTCTGTATGGTATACTCCAAGAACCACTCC 124
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 61 GCCCGAAACGCCATCATGGGAAACACCATCGTCTGTATGGTATACTCCAAGAACCACACC 120
Query 125 ATGGAGAACACCACAAAGCACACAGTCCACACCAGTTGGCCAAATGGTCTTAACAAAGCC 184
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGAGAACACCACAGAGCACACAATCCACACCAGTTGGCCAAATGGTCTTAACAAAGCC 180
Query 185 AGCAACGGTTAGATTCAACGGTCTTGATGCAGAGTCGAGGAAAGATAGGGTGATTCTCCG 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 AGCAACGGTTAGATTCAACGGTCTTGATGCAGAGCCGAGGAAAGATAGGGTGATTCTCCG 240
Query 245 TCAGCTAAGGAGTAGCAGGACCAGTCTGTGGATATGGTGTGTTGCCGGTTTATGTTTTGT 304
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 TCAGCCAAGGAGTAGCAGGACCAGTCTCTGGATATGGTGTGTTGCCGGTTTCTGTTTTGT 300
Query 305 GTTCAGCCTTTTGCTTATCTTCTTTGCGATAACTACTTTGATTGTGTTTCTTGCTATTAG 364
||||||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||
Sbjct 301 GTTCAGCCTTTTGCTTATCTTTTTTGCGATTGCCACTTTGATAGTGTTTCTTGCGATTAG 360
Query 365 ACCAAGAATACCTGTTTTCGACATCCCAAACGCGAACCTACACACGATCTACTTTGACTC 424
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 361 ACCAAGAATACCTGTTTTCGACATCCCAAACGCAAACCTACACACGATCTACTTCGACAC 420
Query 425 ACCAGAGTTTTTCAACGGCGATTTGTCGATGCTGGTGAATTTCACAAACCCTAATAAGAA 484
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 421 GCCGGAGTTTTTCAACGGCGATTTGTCCATGCTGGTGAATTTCACTAACCCTAATAAGAA 480
Query 485 GATAGAAGTGAAGTTTGAGAAGCTTCGGATCGAGCTCTTCTTCTTCAATAGATTGATTGC 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GATAGAAGTGAAGTTTGAGAAGCTTCGGATTGAGCTCTTCTTCTTCAATAGATTGATTGC 540
Query 545 AGTGCAAGTGGTCCAGCCATTCTCGCAGAAAAAGCGTGAGACGAGGTTGGAACCAATCCG 604
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 AGCGCAAGTGGTCCAGCCATTCTTGCAGAAAAAGCATGAGACGAGGTTGGAACCAATCCG 600
Query 605 TTTGATCTCTAGTTTGGTAGGCTTGCCTGTAAACCACGCGGTGGAACTCAAGAGACAGCT 664
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 TTTGATCTCTAGTTTGGTAGGCTTGCCTGTAAACCACGCGGTGGAACTCAGGAGACAGCT 660
Query 665 GGAAAACAACAAGATAGAATATGAGATTAGAGGTACCTTCAAAGTCAGAGCTCATTTTGG 724
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GGAAAACAACAAGATAGAATATGAGATTAGAGGTACCTTCAAAGTCAAAGCTCATTTTGG 720
Query 725 AATGATTCATTACTCTTATTC-GCTGCACGGGAGGTGCCAACTTCAGATGACCGGTCCAC 783
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATGATTCATTACTCTTAT-CAGCTGCACGGGAGGTGCCAACTTCAGATGACCGGTCCAC 779
Query 784 CAACAGGAATCCTGATTTCTCATAATTGCACGATGAAGAAACGATGAAGAAGACGATATG 843
|||| |||||||||||||||| ||||||||||| ||||||| || ||||| ||| ||
Sbjct 780 CAACCGGAATCCTGATTTCTCGTAATTGCACGACGAAGAAATGAAAAAGAATACGGTACA 839
Query 844 GTTCTCT 850
|||||||
Sbjct 840 GTTCTCT 846
> AT4G26488.1 | Symbols: | other RNA | chr4:13380345-13381625
REVERSE LENGTH=1211
Length=1211
Score = 1013 bits (548), Expect = 0.0
Identities = 604/632 (96%), Gaps = 0/632 (0%)
Strand=Plus/Minus
Query 1 TTTCATTGATCACATAACTCATGCCAAATCAACCTCCTCTTCCTCCTCCACCGCAGTTGC 60
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1151 TTTCATTGATCACATAACTCATGCCAAATCTACCTCATCTTCCTCCTCCACCGCAGTTGC 1092
Query 61 AACCGCCCGAAACGCCATCATGGGAAACTCCATCTTCTGTATGGTATACTCCAAGAACCA 120
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1091 AACCGCCCGAAACGCCATCATGGGAAACACCATCGTCTGTATGGTATACTCCAAGAACCA 1032
Query 121 CTCCATGGAGAACACCACAAAGCACACAGTCCACACCAGTTGGCCAAATGGTCTTAACAA 180
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1031 CACCATGGAGAACACCACAGAGCACACAATCCACACCAGTTGGCCAAATGGTCTTAACAA 972
Query 181 AGCCAGCAACGGTTAGATTCAACGGTCTTGATGCAGAGTCGAGGAAAGATAGGGTGATTC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 971 AGCCAGCAACGGTTAGATTCAACGGTCTTGATGCAGAGCCGAGGAAAGATAGGGTGATTC 912
Query 241 TCCGTCAGCTAAGGAGTAGCAGGACCAGTCTGTGGATATGGTGTGTTGCCGGTTTATGTT 300
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 911 TCCGTCAGCCAAGGAGTAGCAGGACCAGTCTCTGGATATGGTGTGTTGCCGGTTTCTGTT 852
Query 301 TTGTGTTCAGCCTTTTGCTTATCTTCTTTGCGATAACTACTTTGATTGTGTTTCTTGCTA 360
||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||| |
Sbjct 851 TTGTGTTCAGCCTTTTGCTTATCTTTTTTGCGATTGCCACTTTGATAGTGTTTCTTGCGA 792
Query 361 TTAGACCAAGAATACCTGTTTTCGACATCCCAAACGCGAACCTACACACGATCTACTTTG 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 791 TTAGACCAAGAATACCTGTTTTCGACATCCCAAACGCAAACCTACACACGATCTACTTCG 732
Query 421 ACTCACCAGAGTTTTTCAACGGCGATTTGTCGATGCTGGTGAATTTCACAAACCCTAATA 480
|| | || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 731 ACACGCCGGAGTTTTTCAACGGCGATTTGTCCATGCTGGTGAATTTCACTAACCCTAATA 672
Query 481 AGAAGATAGAAGTGAAGTTTGAGAAGCTTCGGATCGAGCTCTTCTTCTTCAATAGATTGA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 671 AGAAGATAGAAGTGAAGTTTGAGAAGCTTCGGATTGAGCTCTTCTTCTTCAATAGATTGA 612
Query 541 TTGCAGTGCAAGTGGTCCAGCCATTCTCGCAGAAAAAGCGTGAGACGAGGTTGGAACCAA 600
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 611 TTGCAGCGCAAGTGGTCCAGCCATTCTTGCAGAAAAAGCATGAGACGAGGTTGGAACCAA 552
Query 601 TCCGTTTGATCTCTAGTTTGGTAGGCTTGCCT 632
||||||||||||||||||||||||||||||||
Sbjct 551 TCCGTTTGATCTCTAGTTTGGTAGGCTTGCCT 520
Score = 207 bits (112), Expect = 1e-52
Identities = 139/152 (91%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 700 CCTTCAAAGTCAGAGCTCATTTTGGAATGATTCATTACTCTTATTC-GCTGCACGGGAGG 758
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 522 CCTTCAAAGTCAAAGCTCATTTTGGAATGATTCATTACTCTTA-TCAGCTGCACGGGAGG 464
Query 759 TGCCAACTTCAGATGACCGGTCCACCAACAGGAATCCTGATTTCTCATAATTGCACGATG 818
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 463 TGCCAACTTCAGATGACCGGTCCACCAACCGGAATCCTGATTTCTCGTAATTGCACGACG 404
Query 819 AAGAAACGATGAAGAAGACGATATGGTTCTCT 850
|||||| || ||||| ||| || |||||||
Sbjct 403 AAGAAATGAAAAAGAATACGGTACAGTTCTCT 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5