BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945443
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26310.2 | Symbols: | elongation factor P (EF-P) family pro... 1088 0.0
> AT4G26310.2 | Symbols: | elongation factor P (EF-P) family protein
| chr4:13313777-13316238 REVERSE LENGTH=1231
Length=1231
Score = 1088 bits (589), Expect = 0.0
Identities = 677/719 (94%), Gaps = 7/719 (1%)
Strand=Plus/Plus
Query 1 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTGAAGAGAATCTCAATAGT- 59
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 152 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTCAAGAGAATCTCAAT-CTC 210
Query 60 TCGATCTCTCTTCACCTTCTCTAATACCACTTCTCCCGGAGCACTAACGACTAGGAGATC 119
||||||||||||| ||||||||||| |||||||||| || ||| ||||||||||||| ||
Sbjct 211 TCGATCTCTCTTCTCCTTCTCTAATGCCACTTCTCCTGGGGCAGTAACGACTAGGAGGTC 270
Query 120 ACTGTATTCTTTGAGC-CG--GTTGTTGTCATCAACCCC-TAACGCCGCCGGTGGATGCT 175
|| |||||||||||| | |||||||||||||||||| | ||||||||||||||||||
Sbjct 271 TCTTTATTCTTTGAGCAGGTCGTTGTTGTCATCAACCCCGT-ACGCCGCCGGTGGATGCT 329
Query 176 ACCGAGAAACACCTCCGCTTCAGTCCCCGTGGTCTGCTGTGCAACGCCGCGGTGTTAAAG 235
||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
Sbjct 330 GCCGAGAAACGCCTCCGCTTCATTCTCCGTGGTCTGCTCTGCAACGCCGCGGTGTTAAGG 389
Query 236 TTAACGCGATTCAGCTAAGGGCAGGGAATGTAATTGAACGAACAGGACGTACTTTTCGGG 295
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 390 TTAACGCGATTCAGCTAAGGGCAGGAAATGTAATTGAGCGAACAGGGCGTACTTTTCGGG 449
Query 296 TTGTAGAAGCAGAGCATAAACAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 355
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TTGTAGAAGCAGAGCATAAGCAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 509
Query 356 GTGATGTTGACACTGGGAATAAGCTTAACTTACGGTTTGGATCTGAGGAGTCGGTTGAGA 415
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 510 GTGATGTTGACACTGGGAATAAGCTTAACTTGCGTTTTGGATCTGAGGAGTCGGTTGAGA 569
Query 416 AAGTTTTTGTTGAGGAGAAATCTTTCACGTGTTTGTATACAGAGGGAGATACTGCATTTC 475
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 570 AAGTTTTTGTTGAAGAGAAATCTTTCACGTGTTTGTATGCAGAGGGAGATACTGCATATC 629
Query 476 TGATTGAGCCTAATACGTTTGAACAAGTTGAAGTGCCACTGGACATATTTGGCAAAGCTG 535
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 630 TGATTGAGCCTAATACGTTTGAGCAAGTTGAAGTGCCATTGGACATATTTGGAAAAGCTG 689
Query 536 CAGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 595
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CTGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 749
Query 596 CTGCATCTATCCCTAAGCATATTACATGCACAGTTGTAGAAACACAAGATCCCATGAAAG 655
|||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 750 CTGCATCTATCCCTAAGCATATCACATGCACAGTTGTAGAAACACAACTTCCAATGAAAG 809
Query 656 GCCTAACATCAGCTCCTCGGTACAAGAGAGCGCTCCTGGATAATGGTTCCACTATTCAG 714
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 810 GCCTAACATCAGCTCCTCGGTACAAGAGAGCTCTCCTGGATAATGGTTCCACTATTCAG 868
Score = 171 bits (92), Expect = 1e-41
Identities = 101/105 (96%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 711 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 977
Query 771 TTTTGTTAAGAGGGACAACAAATGAAACTCTTTTGAGTAGTCGTT 815
||||||||||||||||||||||||||||| || | |||||||||
Sbjct 978 TTTTGTTAAGAGGGACAACAAATGAAACTATT--GCGTAGTCGTT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5