BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945448
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:... 1576 0.0
AT5G56640.1 | Symbols: MIOX5 | myo-inositol oxygenase 5 | chr5:... 769 0.0
AT4G26255.1 | Symbols: | other RNA | chr4:13293941-13296465 FO... 370 1e-101
> AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:13297803-13300319
FORWARD LENGTH=1266
Length=1266
Score = 1576 bits (853), Expect = 0.0
Identities = 949/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 2 AAAAACCGTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTG-AG--GAGG 58
||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 117 AAAAACCTTTCTTCGAAAAGATGACGATCTCTGTTGAGAAGCCGATTTTTGAAGAAGAGG 176
Query 59 GTTCTGCATTCAAGAAGAGTGGGGACAAGATCGGAGAGTTCAAATTGGACGGAGGATTTT 118
|||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 177 TTTCTGCATTCGAGAAGAGTGGGGACAATATCGGAGAGTTGAAATTGGACGGAGGATTTT 236
Query 119 CGATGCCGAAAATGGACACCGAA-GACGATGAAGCTTTTTTGGCCCCTGAGATGAATGCA 177
|||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct 237 CGATGCCGAAAATGGACACC-AATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCA 295
Query 178 TTTGGACGTCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 237
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTTGGCCGCCAATTCAGGGACTACGATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAG 355
Query 238 TTTTACAGATTACAACACATTAACCAAACTGTCGACTTTGTGACAAAGATGAGGGCTGAA 297
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 356 TTTTACAGATTACAACACATCAACCAAACTGTCGACTTTGTGAAAAAGATGAGGGCTGAA 415
Query 298 TATGGAAAATTAGATAAAAAGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTTAATGAG 357
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 TATGGAAAATTAGATAAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAG 475
Query 358 GTTGTGGATGAGAGTGATCCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCC 417
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 476 GTTGTGGATGAGAGTGATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCT 535
Query 418 GCGGAAGCAATCCGCAAAGATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATT 477
|| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 536 GCCGAAGCCATCCGCAAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATC 595
Query 478 CATGATCTTGGGAAGGTTATTACTCTTCCACAATTCGGAGGACTTCCACAATGGGCTGTT 537
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 CATGATCTTGGGAAAGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTT 655
Query 538 GTTGGTGACACATTCCCTGTTGGCTGTGCCTTTGATGAATCTAACGTACATCACAAGTAC 597
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 656 GTTGGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACAAGTAC 715
Query 598 TTTATAGATAACCCAGATTTTCACAAC-AAAGCCTACAACACTAAAAATGGGATTTACTC 656
||| | || |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 716 TTTGTGGAAAACCCAGATTTTCACAACGAAA-CCTACAACACTAAAAATGGGATTTACTC 774
Query 657 CGAAGGATGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 716
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGAAGGGTGTGGATTAAACAATGTCATGATGTCTTGGGGCCATGACGACTACATGTACCT 834
Query 717 GGTTGCTAAAGAAAACGGAAGTACCTTGCCGTCTCCTGGACAGTTTATCATACGATACCA 776
||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 835 GGTGGCTAAAGAAAACGGAAGTACCTTGCCGTCGGCTGGACAGTTTATCATAAGATACCA 894
Query 777 TTCCTTTTACCCATTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 836
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCCTTTTACCCTTTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAA 954
Query 837 GGAGAACCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 896
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGAGAATCTGAAGTGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGT 1014
Query 897 TCATGTTGATGTGGAGAAGGTCAAGCCCTACTACATGTCTCTTATCAAGAAATATTTCCC 956
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1015 TCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAATATTTCCC 1074
Query 957 GGAAAACTTGAGGTGGTGAATTCGGTGGAGGAAAA 991
|||||||||||||||||||||||||||||| ||||
Sbjct 1075 GGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAA 1109
> AT5G56640.1 | Symbols: MIOX5 | myo-inositol oxygenase 5 | chr5:22927329-22929643
REVERSE LENGTH=1155
Length=1155
Score = 769 bits (416), Expect = 0.0
Identities = 708/847 (84%), Gaps = 27/847 (3%)
Strand=Plus/Plus
Query 145 GATGAAGCT-TTTTTGGCCCCTGAGATGAATGCATTTGGACGTCAATTCAGGGACT--AC 201
||||||| | |||||||| ||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 117 GATGAAG-TGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACAC 175
Query 202 -GATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAGTTT-TACAG-ATTACAACACATT 258
||| | || |||||||||||| |||||||| | ||| || | | |||||||| |
Sbjct 176 GGATACAAACAGCGAGAGGCAAAAGAGCGTCGAACA-TTTCTA-TGCAACACAACACACT 233
Query 259 AACCAAACTGTCGACTTTGTGACA-AAGATGAG-GGCTGAATATGGAAAATTAGATAAAA 316
||||||||| | |||||||| ||| || ||||| | ||| ||||||||||| || || |
Sbjct 234 AACCAAACTTTAGACTTTGT-ACAGAAAATGAGAAG-TGAGTATGGAAAATTGGACAAGA 291
Query 317 AGGTGATGAGCATTTGGGAATGTTGTGAGC-TTCTTAATGAGGTTGTGGATGAGAGTGAT 375
|||||||| |||||||||||||||||| | ||| || || || ||||| |||||||||
Sbjct 292 TGGTGATGAACATTTGGGAATGTTGTGAACTTTC-AAAAGAAGTGGTGGACGAGAGTGAT 350
Query 376 CCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCCGCGGAAGCAATCCGCAAA 435
|| || |||||||| || || ||||| |||||||||||||| |||||||||||||| |||
Sbjct 351 CCCGACCTCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAA 410
Query 436 GATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATTCATGATCTTGGGAAGGTT 495
||||| ||||| || |||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 411 GATTATCCTAACGAAGATTGGCTTCATCTCACTGCGCTTATCCATGATCTTGGGAAGGTT 470
Query 496 ATTACTCTTCCACAATTCGGAGGACTTCCACAATGGGCTGTTGTTGGTGACACATTCCCT 555
|||| || ||||| || ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 471 CTTACCCTACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTTCCT 530
Query 556 GTTGGCTGTGCCTTTGATGAATCTAACGTACATCACAAGTACTTTATAGATAACCCAGAT 615
||||| ||||| |||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 531 GTTGGGTGTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACCCTGAT 590
Query 616 TTTCACAA--CAAAGCCTACAACACTAAAAATGGGATTTACTCCGAAGGATGTGGA-TTA 672
||| |||| | ||| ||||| || ||| ||| ||||| || ||||| |||||| ||
Sbjct 591 TTTAACAACCCTAAG--TACAATACCAAAGCTGGAATTTATTCTGAAGGCTGTGGACTTG 648
Query 673 AACAATG-TCATGATGTCTTGGGGCCATGACGACTACATGTACCTGGTTGCTAAAGAAAA 731
|| |||| || | ||||| ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct 649 AA-AATGTTC-TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCCAAGGAGAA 706
Query 732 CGGAAGTACCTTGCCGTCTCCTGGAC-AGTTTATCATACGATACCATTCCTTTTACCCAT 790
||||| ||||| || || || |||| | || ||||| ||||||||||||||||| ||||
Sbjct 707 TGGAAGCACCTTACCATCCCCGGGACTA-TTCATCATCCGATACCATTCCTTTTATCCAT 765
Query 791 TGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAACCTGAAGT 850
|||||| |||||||| ||||| || |||||||||||||||||||||||||| || || |
Sbjct 766 TGCACAAGGCTGGAGCTTACACTCACCTTATGAACGAGGAAGACAAGGAGAATCTCAAAT 825
Query 851 GGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGTTCATGTTGATGTGG 910
|||| || ||||| |||||||| ||||| ||||| ||||||||||| || || |||| |
Sbjct 826 GGCTTCATGTTTTTAACAAGTATGACTTATACAGCAAGAGCAAAGTACACGTCAATGTCG 885
Query 911 AGAAGGTCAAGCCCTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAA-CTTGAGG 969
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 886 AGAAGGTTAAGCCGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCT-GAGG 944
Query 970 TGGTGAA 976
|||||||
Sbjct 945 TGGTGAA 951
> AT4G26255.1 | Symbols: | other RNA | chr4:13293941-13296465
FORWARD LENGTH=1222
Length=1222
Score = 370 bits (200), Expect = 1e-101
Identities = 301/349 (86%), Gaps = 10/349 (3%)
Strand=Plus/Plus
Query 138 CGAAGACGATGAAGCTTTTTTGGC-CCCTGAGATGAATGCATTTGGACG-TCAATTCAGG 195
||||||||| ||||| || ||||| ||| ||||| ||||| || || | ||| ||||||
Sbjct 186 CGAAGACGACGAAGCGTTCTTGGCACCC-GAGATAAATGCCTTCGG-GGATCAGTTCAGG 243
Query 196 GACTACGATGTTGAGAGTGAGAGGCA-AAAGGGCGTCGAAGAGTTTTACAGAT-TACAAC 253
|||||||||| |||| ||||||||| ||| ||||| |||| ||||| | || | ||||
Sbjct 244 GACTACGATGCCGAGAATGAGAGGCAGAAA-GGCGTGGAAGCCTTTTAGAAATCT-CAAC 301
Query 254 ACATTAACCAAACTGTCGACTTTGTGACAAAGATGAGGGCTGAATATGGAAAATTAGATA 313
||||||||||||||||||||||||||| | ||| |||||| |||| ||| ||||| ||||
Sbjct 302 ACATTAACCAAACTGTCGACTTTGTGATAGAGACGAGGGCAGAATTTGGTAAATTGGATA 361
Query 314 AA-AAGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTTAATGAGGTTGTGGATGAGAGT 372
|| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 362 AAGAA-GTGATGAGCATTTGGGAATGTTGTGAGCTTCTTAATGAGGTGGTGGACGAGAGT 420
Query 373 GATCCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCCGCGGAAGCAATCCGC 432
||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||| ||
Sbjct 421 GATCCAGATCTCGACGAGCCTCAAATTCAACATTTGCTTCAATCTGCCGAAGCCATCAGC 480
Query 433 AAAGATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATTCATG 481
|| ||||||| || || | ||||||||||||||||||||| |||||||
Sbjct 481 AAGGATTACCTTAGCGAAGCTTGGCTTCATCTAACCGCTCTCATTCATG 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5