BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945449

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:...   379    2e-104


> AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:13297803-13300319 
FORWARD LENGTH=1266
Length=1266

 Score =  379 bits (205),  Expect = 2e-104
 Identities = 302/349 (87%), Gaps = 6/349 (2%)
 Strand=Plus/Plus

Query  213  ACCAAAGACGACGAAGCGTTCTTGGCACCAGAAATGAATGCATTCAGCCGTCAATTCAGG  272
            ||||| ||||||||||| || ||||| || || |||||||||||  |||| |||||||||
Sbjct  254  ACCAATGACGACGAAGCTTTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGG  313

Query  273  GACTATGATGCTGAGTCTGAAAGGCAGAAA-AGCGTGGAAGCTTTTTACAAAGCT-CAGC  330
            ||||| |||| ||||  ||| ||||| |||  |||| ||||  ||||||| |  | || |
Sbjct  314  GACTACGATGTTGAGAGTGAGAGGCA-AAAGGGCGTCGAAGAGTTTTACAGA-TTACAAC  371

Query  331  ATATCAACCAAACTGTCG-CTTTTGTGACAAAGATGAGGGCTGATTTTGGAAAATTGGAC  389
            | |||||||||||||||| | ||||||| ||||||||||||||| | ||||||||| || 
Sbjct  372  ACATCAACCAAACTGTCGAC-TTTGTGAAAAAGATGAGGGCTGAATATGGAAAATTAGAT  430

Query  390  AAAAAGGTGATGAGCATTTGGGAATGCTGTGAGCTCCTTAACGAGGTCGTAGATGAGAGT  449
            |||| ||||||||||||||||||||| |||||||| || || ||||| || |||||||||
Sbjct  431  AAAATGGTGATGAGCATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGT  490

Query  450  GATCCAGATCTTGATGAGCCTCAGATTCAACATTTGCTTCAATCCGCGGAAGCCATCCGC  509
            |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct  491  GATCCAGATCTTGACGAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGC  550

Query  510  AAAGATTACCCTAATGAAGATTGGCTTCATCTAACCGCTCTTATTCATG  558
            |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  551  AAAGATTACCCTAATGAAGATTGGCTTCATCTGACCGCTCTTATCCATG  599



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32250322374


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5