BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945451
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26240.1 | Symbols: | unknown protein; Has 30201 Blast hits... 979 0.0
> AT4G26240.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13286774-13288971
REVERSE LENGTH=909
Length=909
Score = 979 bits (530), Expect = 0.0
Identities = 601/636 (94%), Gaps = 2/636 (0%)
Strand=Plus/Plus
Query 1 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGAAGAACTCGTCGC 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 55 TGCAATCTGAAGAAAAATCAAATGAAGAAGTTAGCGAGAAAATGGCGGAGAACTCGTCGT 114
Query 61 GATGAAGATGATGATAAGTTCGTCCTTCCTACTTCCGACGACGTCGATTCTCGGCCTATC 120
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 115 GACGAAGATGATGATAAGTTCGTCCTTCCTACTTCTGAAGACGTCGATTCTCGGCCTATT 174
Query 121 GATACGCAAGAGCAAGAAGAGTACGTTAGGTCGCTTGAGGAAGCTCATGCTCAGCAAAGT 180
|||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 175 GATACGCAAGAGCAGGAGGAGTACGTTCGGTATCTTGAGGAAGCTCATGCTCAGCAAAGT 234
Query 181 CGGCAATGGAGGAGTGTGTTCGTGGTTCTCCTGATCTGCTATGGAGCTTTTCTCTTCTAC 240
| ||||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||
Sbjct 235 CTTCAATGGAGGAGCGTGTTTGTGGTTCTTCTGATCTGCTTTGGAGCTTTCCTCTTCTAC 294
Query 241 TCTATTTTTCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTCATGGAA 300
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 TCCATTTTCCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTTATGGAA 354
Query 301 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGACTTGCTGCCTC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 355 GATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGGCTTGCTCCCTC 414
Query 361 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCATGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 TCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCTTGT 474
Query 421 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTACTGAGGCTTCCGAAATTC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTGCTGAGGCTTCCGAAATTC 534
Query 481 CGATGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CGGTGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATAC 594
Query 541 GTGGACCATCTACTAGAGGAATCATCTGAGGAAGTGAAAAAATTAAGGAACTATATGTAT 600
||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 595 GTGGACCATCTTCTAGAGGAGTCATCTGAGGAAGTGAAAAAACTGAGGAACTATATGTAT 654
Query 601 GCATATAAAGCAAGGTAGAGA--TGATCGCTACTTT 634
|||||||||||| |||||||| | || ||||||||
Sbjct 655 GCATATAAAGCACGGTAGAGAGATAATAGCTACTTT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5