BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945453
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26220.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1088 0.0
> AT4G26220.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:13283576-13285323
FORWARD LENGTH=1048
Length=1048
Score = 1088 bits (589), Expect = 0.0
Identities = 653/685 (95%), Gaps = 0/685 (0%)
Strand=Plus/Plus
Query 57 CCAAGGGATTGCTGAAAAGTGAAGAGCTCTATAAATATATACTGGAGACCAGTGTGTACC 116
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 CCAAGGGATTGCTGAAAAGTGAAGAGCTCTATAAATATATACTGGAGACTAGTGTGTACC 248
Query 117 CACGCGAGCCGGAGGTTCTCAAGGAGCTTAGGAACATTACTCATAACCACCCTCAAGCTG 176
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 249 CACGCGAGCCAGAGGTTCTCAGGGAGCTTAGGAACATTACTCATAACCACCCTCAAGCTG 308
Query 177 GGATGGCTACTGCACCGGACGCTGGCCAGTTGATGGGGATGCTGCTTAAACTGGTAAATG 236
| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 309 GTATGGCTACTGCACCAGACGCTGGCCAGTTGATGGGGATGCTGCTGAATCTGGTAAATG 368
Query 237 CAAGAAAGACTATCGAGGTCGGGGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTA 296
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 369 CAAGAAAGACTATCGAGGTTGGGGTTTTCACTGGATACTCTCTTCTCCTCACTGCTCTTA 428
Query 297 CATTACCAGAAGATGGCAAGGTTATTGCCATTGATGTGAATAGAGACTCGTATGAAATAG 356
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 429 CGCTACCAGAAGATGGCAAGGTTATCGCCATTGACATGAATAGAGACTCGTATGAAATAG 488
Query 357 GATTGCCGGTTATAAAGAAAGTTGGTGTTGAACACAAAATTGATTTCAGAGAGTCTGAAG 416
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 489 GATTGCCGGTTATAAAGAAAGCTGGTGTTGAACACAAAATTGATTTCAAAGAGTCTGAAG 548
Query 417 CTCTTCCAGCCCTCGACGAGCTTTTAAACGATAAAGCGAATGAGGGTGGGTTCGATTTCG 476
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||
Sbjct 549 CTCTTCCAGCCCTCGACGAGCTTTTAAACAATAAAGTGAATGAGGGTGGATTCGACTTCG 608
Query 477 CATTTGTGGATGCAGACAAGGTGAACTATTGGAACTACCATGAGAGGCTTATTAGACTGA 536
|||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||
Sbjct 609 CATTTGTGGATGCAGACAAGCTGAATTATTGGAACTATCATGAGAGGCTTATTAGATTGA 668
Query 537 TCAAGGTTGGTGGGATAATAGTGTATGACAACACTCTCTGGGGAGGATCAGTTGCTGAGC 596
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 669 TCAAGGTTGGTGGGATCATAGTGTATGATAACACTCTCTGGGGAGGATCAGTTGCTGAAC 728
Query 597 CAGACTCGTCCACGCCCGAGTGGAGGATAGAAATCAAGAAAGCAACCCTCGAGCTGAACA 656
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 729 CGGACTCGTCCACGCCCGAGTGGAGGATAGAAGTCAAGAAAGCAACCCTCGAGCTGAACA 788
Query 657 AGAAACTCTCGGCTGATAAGCGTGTGCAGATCTCGCAAGCTGCGCTTGGCGATGGAATCA 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 789 AGAAACTCTCGGCTGATCAGCGTGTGCAGATCTCGCAAGCTGCGCTTGGCGATGGTATCA 848
Query 717 CTATTTGCAGGAGATTATATTGAGC 741
||||||||||||| |||||||||||
Sbjct 849 CTATTTGCAGGAGGTTATATTGAGC 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5