BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945458
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26170.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1735 0.0
> AT4G26170.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING:
F mature embryo stage, petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: effector of transcription2
(TAIR:AT5G56780.1); Has 75 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi
- 0; Plants - 70; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink). | chr4:13256930-13259382 FORWARD LENGTH=1521
Length=1521
Score = 1735 bits (939), Expect = 0.0
Identities = 1131/1222 (93%), Gaps = 19/1222 (2%)
Strand=Plus/Plus
Query 22 ATGTTCAAGAGAGACGACTACATTCGAACTAATCACGACGCCGTCTCTTCCAAGTGGCAG 81
||||||||||||||||||||||||||||||||||| ||| || | | ||| |||||||||
Sbjct 318 ATGTTCAAGAGAGACGACTACATTCGAACTAATCATGACCCCTTTTTTTCAAAGTGGCAG 377
Query 82 GGTTTCGCCCGATCCATGCTTCTGCGTAAACCCGTCTCAGAAACTGCAGAATTACGCAAG 141
|||||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||||||
Sbjct 378 GGTTTCGCCCGATCTATGTTTCTGCGTAAACCCATTTCAGAAACTGCAGAATT-CGCAAG 436
Query 142 ATTTTTGCGGACTACTCCTTAATTTCTCGAGATTTAGGTCCAAAGATTCTGATAGGAGCC 201
| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 437 ACTTTTGCGGACTACTCCTTAATTTCTCGAGATTTAGGTCCAAAG---C-CAAAGGAGCC 492
Query 202 AGCGATAAGGAAAATTTCAGAAAAGGGAAAGATCGTGTAGGTAGATACAGAGTCCAAGGA 261
| ||| ||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||
Sbjct 493 AACGAGAAGGAAAATTTCAGAGAAGGGAAAGATCTTGTTGGTAGAAACAGAGTCCAAGGA 552
Query 262 GCCTTCCCGGGTCTCTATGAGCTCGGTCATGACCATGGCCGAAAAGATGATGTTCTTGTG 321
||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 553 GCCTTCCAGGGTCTGTATGAGCTCAGTCATGACCATGGCAGAAAAGATGATGTTCTTGTG 612
Query 322 GCTAATCTTGGTCAAGCTGAAAGTGAAAGCATTAGATCTCGGCTCCGGTCTTATACTAGA 381
||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||
Sbjct 613 GCTAATCTTGGTCAA-C-----CTGAAAGCATTAGATCCCGGCTCCGGTCTTATAGTAGA 666
Query 382 TCTTTTGCTCATCATGACTTGCTTAAGAAGGGTTTGTCTCAAACAATTCTTCCTACTACT 441
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 667 TCTTTTGCTCATCATGACTTGCTTAAGCAGGGTTTGTCTCAAACTATTCTTCCTACTACT 726
Query 442 CAGAACAAAAGTGGCAACCGAACCGAAGAGAAGAAGTCTGATTCTGCAGAAGAGAGAGAG 501
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 727 CAGAACAAAAGTGACAACCAAACCGAAGAGAAGAAGTCTGATTCTGAAGAAGAGAGAGAG 786
Query 502 GTCAGTTCTGATGCTGCTGAGAAGGAGGGTAATTCTCTTCCATCTCTACTTAGACTCAGT 561
||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 787 GTCAGTTCTGATGCTGCTGAGAAGGAGAGTAATTCGCTTCCATCTATACTTAGACTCAGT 846
Query 562 CGGTCCAGACCTCAACCGGTTTCAGACAGACATGATGACATAGTTGATGGGTCTGACTCT 621
||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 847 CGGTCTAGACCTCAACCGGTTTCAGAGAAACATGATGACATAGTTGATGAGTCTGATTCT 906
Query 622 GCTTCTGTTTGTGGAGTCTTACTAGAAGATGGTACTACTTGCTCTACAACTCCAATCAAA 681
||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 907 GCTTCTGCTTGTGGAGTCTTACTAGAAGATGGTACTACTTGCACTACAACTCCAGTCAAA 966
Query 682 GGAAGAAAGAGATGCTCAGAGCATAAAGGGAAGAGACTTTCACGTGTTTCCCCCGAAAAA 741
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 967 GGAAGAAAGAGATGCACAGAGCATAAAGGGAAGAGACTTTCTCGTGTTTCCCCCGGGATC 1026
Query 742 CACATACCGTGTGAAGCTCCTACTGTAAGAGAATGCGAAGAAACTGACAATATATGTGGA 801
|||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1027 CACATACCGTGTGAAGTTCCTACCGTAAGAGAATGTGAAGAAACTGAGAATATATGTGGA 1086
Query 802 GTGATTTTACCTGACATGGTACGTTGCAGAACAAAACCTGTTTCAAGGAGAAGACGATGC 861
|||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 1087 GTGATTTTACCTGACATGATACGTTGCAGAAGTAAACCTGTTTCAAGGAGAAAACGATGC 1146
Query 862 GAGGATCACAAGGGAATGAGAGTTAACGCCTTCTTCTTTCTGCTGAACCCAACAGAACGT 921
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1147 GAGGATCACAAGGGAATGAGAGTTAACGCCTTCTTTTTTCTGCTGAACCCAACAGAACGT 1206
Query 922 GATAAGGCCGTCAAAGAGGATAAATCCAAATCC-GAGACATGTACAGGCATGAACCAAGA 980
||||| |||||||| ||||| ||||||||| || |||||| |||||||||||||||||||
Sbjct 1207 GATAAAGCCGTCAATGAGGACAAATCCAAA-CCTGAGACAAGTACAGGCATGAACCAAGA 1265
Query 981 GGATCCAAGTCCGGGTCTTTTTTGTGAAGCTACAACAAAGAATGGTTTGCCTTGTACAAG 1040
|| | || ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1266 GGGT-----TC-GGGTCTTTTATGTGAAGCTACAACAAAGAATGGATTGCCTTGTACAAG 1319
Query 1041 AAGTGCTCCTGAAGGAAGCAGAAGATGTTGGCAGCACAAAGATAAAACTTTGAACCACGG 1100
|||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 AAGTGCTCCTGAGGGCAGCAAAAGATGTTGGCAGCACAAAGATAAAACATTGAACCACGG 1379
Query 1101 ATCATCCGAAAATGTTCAGTCAGCAACTGTAAGTCAAGTAATTTGTGGCTTTAAGCTGTA 1160
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1380 ATCATCTGAAAATGTTCAGTCAGCAACTGCAAGTCAAGTAATTTGTGGCTTTAAGCTGTA 1439
Query 1161 CAATGGATCGGTATGCGAGAAATCTCCAGTGAAAGGACGGAAGAGATGTGAGGAGCACAA 1220
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 CAATGGATCAGTATGCGAGAAATCTCCAGTGAAAGGAAGGAAGAGATGTGAGGAGCACAA 1499
Query 1221 GGGGATGAGAATCACATCTTGA 1242
||||||||||||||||||||||
Sbjct 1500 GGGGATGAGAATCACATCTTGA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5