BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945462 Length=331 Score E Sequences producing significant alignments: (Bits) Value AT1G47265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 169 2e-41 > AT1G47265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:17324318-17324911 FORWARD LENGTH=594 Length=594 Score = 169 bits (91), Expect = 2e-41 Identities = 154/183 (84%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 147 CGGATCTCTTCTTCCTCCTCAAAACTGCTCTACGGTGGCGGGATGG-CAACGGATCCTGG 205 |||||| | |||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct 275 CGGATCGCCTCTTCCTCCTCAAAACTGCTCTACGGTGGCAGGA-GGACAACGGATCCTGA 333 Query 206 ATCACTATCTCCGTTCGGCACGCGT-T-GTCCAGGCTCACCGGAGGTTTTCTGTTCCGGC 263 || || ||||||||||| ||| | | ||| |||||| || ||| |||||||||||| Sbjct 334 ATTACCATCTCCGTTCG--ACGAATCTCGTCTAGGCTCCCCAAAGGGTTTCTGTTCCGGT 391 Query 264 GAGTTTATGCAGTTCTTGGACGGCGGCTCT-ATCGTGTTCTACGAT-TAGAGATTAGGGT 321 ||| || |||| ||||||||||||||||| |||||||| |||||| | ||||||||| | Sbjct 392 GAGATTCTGCAATTCTTGGACGGCGGCTCAGATCGTGTTTTACGATAT-GAGATTAGGAT 450 Query 322 TTT 324 ||| Sbjct 451 TTT 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15432198943 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5