BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945462

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47265.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   169    2e-41


> AT1G47265.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:17324318-17324911 
FORWARD LENGTH=594
Length=594

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 154/183 (84%), Gaps = 9/183 (5%)
 Strand=Plus/Plus

Query  147  CGGATCTCTTCTTCCTCCTCAAAACTGCTCTACGGTGGCGGGATGG-CAACGGATCCTGG  205
            |||||| | |||||||||||||||||||||||||||||| ||| || |||||||||||| 
Sbjct  275  CGGATCGCCTCTTCCTCCTCAAAACTGCTCTACGGTGGCAGGA-GGACAACGGATCCTGA  333

Query  206  ATCACTATCTCCGTTCGGCACGCGT-T-GTCCAGGCTCACCGGAGGTTTTCTGTTCCGGC  263
            || || |||||||||||  |||  | | ||| |||||| ||  ||| |||||||||||| 
Sbjct  334  ATTACCATCTCCGTTCG--ACGAATCTCGTCTAGGCTCCCCAAAGGGTTTCTGTTCCGGT  391

Query  264  GAGTTTATGCAGTTCTTGGACGGCGGCTCT-ATCGTGTTCTACGAT-TAGAGATTAGGGT  321
            ||| || |||| |||||||||||||||||  |||||||| |||||| | ||||||||| |
Sbjct  392  GAGATTCTGCAATTCTTGGACGGCGGCTCAGATCGTGTTTTACGATAT-GAGATTAGGAT  450

Query  322  TTT  324
            |||
Sbjct  451  TTT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5