BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945470

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26060.1 | Symbols:  | Ribosomal protein L18ae family | chr4...   684    0.0  
  AT5G57060.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   331    3e-90


> AT4G26060.1 | Symbols:  | Ribosomal protein L18ae family | chr4:13214746-13216461 
REVERSE LENGTH=858
Length=858

 Score =  684 bits (370),  Expect = 0.0
 Identities = 422/447 (94%), Gaps = 3/447 (1%)
 Strand=Plus/Plus

Query  1    TCATCATCTACTTGAAGAACGTATGGGGGAAACTGTTAAAGAGCGCGGTGATGGAAGTGC  60
            ||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  210  TCATCATCTGC-TGAAGAACGTATGGGAGAAACTGTTAAAGAGCGTGGTGATGGAAGTGC  268

Query  61   AGAGCTGGTTAAATCCATGGCTGATAAGCATGTCGGTCTCGTGAGACCAGCTGCTAAATA  120
            |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||
Sbjct  269  AGAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATA  328

Query  121  TTACTCTGCAATTAAAGATTCTATGGTGAGTGGGAAAGGAAGATATACGCTTGTAAAAGA  180
            |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  329  TTACTCTGCAGTTAAAGATGCTATGGTGTGTGGGAAAGGAAGATATACGCTTGTAAAAGA  388

Query  181  TGTTGACGAGGTGGAAAATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGAAT  240
             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  389  CGTAGACGAGGTGGAAAATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGAAT  448

Query  241  CGGATGGTTCTCCTTCCTCTTGGGTTTTGTGTTTCCTTTCTTGTGGTACTATGCGACA-T  299
            ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| |
Sbjct  449  CGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTTCCCTTTCTTATGGTACTATGCAACACT  508

Query  300  TTCTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTT  359
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  509  TT-TATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTT  567

Query  360  CCGCAATCGCTGCGATGGGATTCTCCCTCCTGCTACTGGTGATTGTTGTTTTCAGGTGGT  419
            |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||| 
Sbjct  568  CCGCAATCACTGCGATGGGATTCTCCCTCTTGCTACTAGTGATTGTTGTTTTCTGGTGGC  627

Query  420  TCTAATGGGTTCACTGACTTATACGCC  446
            |||||||||||| ||||||||||||||
Sbjct  628  TCTAATGGGTTCTCTGACTTATACGCC  654


> AT5G57060.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: defense response to Gram-negative bacterium, 
cytolysis; LOCATED IN: integral to membrane; EXPRESSED 
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; 
CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal 
cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana 
protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr5:23090152-23091988 FORWARD LENGTH=780
Length=780

 Score =  331 bits (179),  Expect = 3e-90
 Identities = 305/365 (84%), Gaps = 12/365 (3%)
 Strand=Plus/Plus

Query  62   GAGCTGGTTAAATCCATGGCTGATAAGCATGTCGGTCTCGTGAGACCAG-CTGCTAAATA  120
            ||||||||||||| ||| ||||||| ||||| |   ||| ||| || || || ||  | |
Sbjct  217  GAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTCATGAAACAAGCCT-CTCGACA  275

Query  121  TTACTCTGCAATTAAAGATTCTATGG-TGAGTGGGAAAGGAAGATATACGCTTGTAAAAG  179
            ||| || |||||||||||| |||||| |  ||||||||  ||||||||| ||||||||||
Sbjct  276  TTATTCCGCAATTAAAGATGCTATGGCT-CGTGGGAAAAAAAGATATACACTTGTAAAAG  334

Query  180  ATGTTGACGAGGTGGAAA-ATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGA  238
            |||| |||||  |||||| | ||||  |||||||| ||||||||||||||||||||||||
Sbjct  335  ATGTAGACGACATGGAAACA-GGAGCATATGACAAACCTCTTCCATGCTTTGGTTGTGGA  393

Query  239  ATCGGATGGTTCTCCTTCCTCTTGGGTTTTGTGTTTCC-TTTCTTGTGGTACTATGC-GA  296
            ||||||||||| ||||||||| | || ||| |||| || ||| |||||||||||||| | 
Sbjct  394  ATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTT-TTGTGGTACTATGCTG-  451

Query  297  CATTTCTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTG  356
            |||| || |||||||||||||| || || || |||||||||||||||||||| |||||||
Sbjct  452  CATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAAAGAGCCGGTCTTGCTG  511

Query  357  CTTCCGCAATCGCTGCGATGGGATTCTCCCTCCTGCT-ACTGGTGATTGTTGTTTTCAGG  415
            ||||||||||| |||||||||| ||||| ||  | || ||| |||||| ||| |||| ||
Sbjct  512  CTTCCGCAATCACTGCGATGGGCTTCTCTCTTGT-CTTACTCGTGATTTTTGCTTTCCGG  570

Query  416  TGGTT  420
            |||||
Sbjct  571  TGGTT  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5