BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945486 Length=892 Score E Sequences producing significant alignments: (Bits) Value AT4G25930.1 | Symbols: | Protein of unknown function (DUF295) ... 717 0.0 > AT4G25930.1 | Symbols: | Protein of unknown function (DUF295) | chr4:13168127-13169393 FORWARD LENGTH=1104 Length=1104 Score = 717 bits (388), Expect = 0.0 Identities = 495/546 (91%), Gaps = 9/546 (2%) Strand=Plus/Plus Query 329 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGAAGTAT-TTGTGGTACTTGGATC 387 |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| Sbjct 561 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGACGTATCTT-TGGTACTTGGATC 619 Query 388 TCCACTTCGATGAGGATAATGTCCAGCCCAACTTATCTTATTTAT-TGTTTAAGGAGGAC 446 | ||||||||||||||| ||||| ||||| ||| ||| ||||||| | |||| ||||||| Sbjct 620 TTCACTTCGATGAGGATGATGTCGAGCCCTACTCATCATATTTATAT-TTTAGGGAGGAC 678 Query 447 CCTCTCCAGAAGTTGTATAAGACGGATTTGGAAGATTACATCTGGCGTTCCAGAACAGAC 506 ||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 679 CCTCTCCTGAGGTTGTATAAGATGGATTTGGAAGATTACATCTGGCGTTTCAGAACAGAC 738 Query 507 CACCTGGTGGAGTCACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTGTGAGGA--AG 564 ||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||| | Sbjct 739 CACCTGGCGGAGTTACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTTTAAGGACGTG 798 Query 565 A-CAGGGACGACGAGAAAATCATCCAGAAAACGCATGGGTTTATGGTGTTTAGAGCGGAT 623 | | | ||| | |||||||| |||||||||| ||||||||| ||||||||||| |||| Sbjct 799 ATGATGAACGTGGGGAAAATCACCCAGAAAACGGATGGGTTTAAGGTGTTTAGAGTGGAT 858 Query 624 ACAATCTGCGGTGAATTGATTAACACGCAAGACATTGGAAATCTTTGTATATTTCTTGGA 683 ||||| |||||| | |||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct 859 ACAATTTGCGGTCACTTGACTAACACGCAAGACATTGGAGATCTTTGTATCTTTCTTGGA 918 Query 684 CATGGTGAAGCATTCTGTGTCCCGGCAAGCTCGTCTCCTGGACTTATACCTAACTCCATC 743 ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 919 CATGGTGAAGCATACTGTGTCCCGGCAAGCTCGTCTCCTGGACTCAGACCTAACTCCATC 978 Query 744 TATTACGTGGGCTGTAACTTTGGTGTTCACGATATCGCAACCAACACTACCACTAACTTC 803 ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 979 TATTATGTGGGCTGTAACTTTGGTGTTCACGATATTGCAACCGACACTACCACTAACTTC 1038 Query 804 TACACA-AAAGATAAAGTTCCATTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 862 |||||| | || ||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1039 TACACACACAG-TAATGTTCCTTTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 1097 Query 863 CTCTTA 868 |||||| Sbjct 1098 CTCTTA 1103 Score = 407 bits (220), Expect = 1e-112 Identities = 289/319 (91%), Gaps = 17/319 (5%) Strand=Plus/Plus Query 21 ATGTCTCAGCTCATTAACCGACTCTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 80 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCAGCTCATAAACCGACTTTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 60 Query 81 CACAACAAGAACGTTCGGATGTTCTCATCATCTAAGTCGACATACCCGTACGTGTTGATT 140 |||| |||| | |||||||||||||| | |||||| |||||||||||||| |||||||| Sbjct 61 CACAGCAAGCAGGTTCGGATGTTCTC--C-TCTAAGCCGACATACCCGTACTTGTTGATT 117 Query 141 GACCACCTCCTTAAGACGACGAAACACTGTTCCAATGATCAAGTATACTATGCTGATAA- 199 ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 118 GACCACCTCCTTAAGACGACGGAACACTGTTCCAATGATCAAGTATACTACGATGATAAA 177 Query 200 ------GAA--G---CTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGATG 248 ||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 178 TATTACGAAAAGAATCTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGGTG 237 Query 249 ATGACCGTTGGATTTTCACATAAAGATGGAT-GGAGAGTTCACTTGGAGAAATCTGAGTA 307 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 238 ATGACCGTTGGATTTTCACATAAAGATG-ATTGGAGAGTTCACTTGGAGAAATCTGAGGA 296 Query 308 TAGTTCCAAAAGTCTCATG 326 |||||||| |||||||||| Sbjct 297 TAGTTCCACAAGTCTCATG 315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43553005449 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5