BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945486
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25930.1 | Symbols: | Protein of unknown function (DUF295) ... 717 0.0
> AT4G25930.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:13168127-13169393 FORWARD LENGTH=1104
Length=1104
Score = 717 bits (388), Expect = 0.0
Identities = 495/546 (91%), Gaps = 9/546 (2%)
Strand=Plus/Plus
Query 329 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGAAGTAT-TTGTGGTACTTGGATC 387
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 561 GAAGAATAAAAAATTTCTCAGTGTTAGTCCTTCTGGGACGTATCTT-TGGTACTTGGATC 619
Query 388 TCCACTTCGATGAGGATAATGTCCAGCCCAACTTATCTTATTTAT-TGTTTAAGGAGGAC 446
| ||||||||||||||| ||||| ||||| ||| ||| ||||||| | |||| |||||||
Sbjct 620 TTCACTTCGATGAGGATGATGTCGAGCCCTACTCATCATATTTATAT-TTTAGGGAGGAC 678
Query 447 CCTCTCCAGAAGTTGTATAAGACGGATTTGGAAGATTACATCTGGCGTTCCAGAACAGAC 506
||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 679 CCTCTCCTGAGGTTGTATAAGATGGATTTGGAAGATTACATCTGGCGTTTCAGAACAGAC 738
Query 507 CACCTGGTGGAGTCACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTGTGAGGA--AG 564
||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 739 CACCTGGCGGAGTTACCCTCCGGTGAACATTTCCTCGTCAAGTGGTTCTTTAAGGACGTG 798
Query 565 A-CAGGGACGACGAGAAAATCATCCAGAAAACGCATGGGTTTATGGTGTTTAGAGCGGAT 623
| | | ||| | |||||||| |||||||||| ||||||||| ||||||||||| ||||
Sbjct 799 ATGATGAACGTGGGGAAAATCACCCAGAAAACGGATGGGTTTAAGGTGTTTAGAGTGGAT 858
Query 624 ACAATCTGCGGTGAATTGATTAACACGCAAGACATTGGAAATCTTTGTATATTTCTTGGA 683
||||| |||||| | |||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 859 ACAATTTGCGGTCACTTGACTAACACGCAAGACATTGGAGATCTTTGTATCTTTCTTGGA 918
Query 684 CATGGTGAAGCATTCTGTGTCCCGGCAAGCTCGTCTCCTGGACTTATACCTAACTCCATC 743
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 919 CATGGTGAAGCATACTGTGTCCCGGCAAGCTCGTCTCCTGGACTCAGACCTAACTCCATC 978
Query 744 TATTACGTGGGCTGTAACTTTGGTGTTCACGATATCGCAACCAACACTACCACTAACTTC 803
||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 979 TATTATGTGGGCTGTAACTTTGGTGTTCACGATATTGCAACCGACACTACCACTAACTTC 1038
Query 804 TACACA-AAAGATAAAGTTCCATTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 862
|||||| | || ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TACACACACAG-TAATGTTCCTTTAAGGTCCACTGAGTTCCCTTACTGGCCTCTTCCTCT 1097
Query 863 CTCTTA 868
||||||
Sbjct 1098 CTCTTA 1103
Score = 407 bits (220), Expect = 1e-112
Identities = 289/319 (91%), Gaps = 17/319 (5%)
Strand=Plus/Plus
Query 21 ATGTCTCAGCTCATTAACCGACTCTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 80
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCAGCTCATAAACCGACTTTTGAAGCCATCTGTCTGCAAAAATGTCATCAGATCT 60
Query 81 CACAACAAGAACGTTCGGATGTTCTCATCATCTAAGTCGACATACCCGTACGTGTTGATT 140
|||| |||| | |||||||||||||| | |||||| |||||||||||||| ||||||||
Sbjct 61 CACAGCAAGCAGGTTCGGATGTTCTC--C-TCTAAGCCGACATACCCGTACTTGTTGATT 117
Query 141 GACCACCTCCTTAAGACGACGAAACACTGTTCCAATGATCAAGTATACTATGCTGATAA- 199
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 118 GACCACCTCCTTAAGACGACGGAACACTGTTCCAATGATCAAGTATACTACGATGATAAA 177
Query 200 ------GAA--G---CTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGATG 248
||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 TATTACGAAAAGAATCTCGTGATTAAGGACCAGGGACTCGCAGAGGAGGTCCGAGAGGTG 237
Query 249 ATGACCGTTGGATTTTCACATAAAGATGGAT-GGAGAGTTCACTTGGAGAAATCTGAGTA 307
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 238 ATGACCGTTGGATTTTCACATAAAGATG-ATTGGAGAGTTCACTTGGAGAAATCTGAGGA 296
Query 308 TAGTTCCAAAAGTCTCATG 326
|||||||| ||||||||||
Sbjct 297 TAGTTCCACAAGTCTCATG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5