BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945488
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25920.1 | Symbols: | Protein of unknown function (DUF295) ... 259 4e-68
> AT4G25920.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:13165475-13166872 FORWARD LENGTH=1204
Length=1204
Score = 259 bits (140), Expect = 4e-68
Identities = 191/215 (89%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 792 ACAGAAGACATTGGAGATCTTTGCATCTTTCTTGGGCATAGTGAGGCTTTCTGCATCCAG 851
|||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||| |
Sbjct 931 ACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCCCG 990
Query 852 GCCAGTTCTTGCCCC-GGGCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAA-TTTCG 909
|| || || | |||| || ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 991 GCTAGCTCGT-CCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTT-G 1048
Query 910 GTGTGTATGATCTCACCACCAAAACTTGCACTATCTTC-TACACGGAAGAGGACGTTCCA 968
|||| ||||||||||||||||||||||||||||| ||| | ||| |||| || ||||
Sbjct 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCT-CACAAAAGATGATAATCCA 1107
Query 969 TTAAGGAACTTGGAATTCCCTTACTGGCCTCCTCC 1003
|||||||| ||||||||||||||||||||||||||
Sbjct 1108 TTAAGGAAATTGGAATTCCCTTACTGGCCTCCTCC 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5